View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2315_low_14 (Length: 218)

Name: NF2315_low_14
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2315_low_14
NF2315_low_14
[»] chr4 (6 HSPs)
chr4 (1-125)||(23613174-23613298)
chr4 (10-125)||(4513622-4513740)
chr4 (28-125)||(41702884-41702985)
chr4 (126-174)||(23613051-23613099)
chr4 (7-68)||(53452475-53452536)
chr4 (140-168)||(52470953-52470981)
[»] chr6 (2 HSPs)
chr6 (27-125)||(10040486-10040588)
chr6 (6-115)||(35018998-35019111)
[»] chr3 (3 HSPs)
chr3 (1-73)||(46170406-46170478)
chr3 (22-74)||(12055680-12055732)
chr3 (140-176)||(45254015-45254051)
[»] chr5 (1 HSPs)
chr5 (9-125)||(42943552-42943672)
[»] chr1 (3 HSPs)
chr1 (133-194)||(47308946-47309007)
chr1 (8-115)||(4641813-4641924)
chr1 (20-73)||(29525928-29525980)
[»] chr2 (2 HSPs)
chr2 (21-125)||(9115047-9115156)
chr2 (140-190)||(16038841-16038891)
[»] chr8 (1 HSPs)
chr8 (25-125)||(35661486-35661589)
[»] chr7 (1 HSPs)
chr7 (134-199)||(17771251-17771316)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 23613298 - 23613174
Alignment:
Q  1 tacatcactaaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaataaataatacatc 100  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||| | ||| ||||||||||||||||||||    
T  23613298 tacaccactaaatagaatgctccaacttacaccattaaaataacaccttgtaacaactttttcatcataagatcgggtctgttagaataaataatacatc 23613199  T
Q  101 aatgacttatattgaggtggtgtaa 125  Q
    |||||||||||||||||||||||||    
T  23613198 aatgacttatattgaggtggtgtaa 23613174  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 4513622 - 4513740
Alignment:
Q  10 aaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaataa----ataatacatcaatga 105  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||| |||| ||||||||||   | ||||||||||||    |||||| ||||||||    
T  4513622 aaataaaatgccccaacttacaccactaaaataacaccttgtaatagc-ttttcatcataagatccggaccgttagaataaatttataatatatcaatga 4513720  T
Q  106 cttatattgaggtggtgtaa 125  Q
    ||||||||||||||||||||    
T  4513721 cttatattgaggtggtgtaa 4513740  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 41702884 - 41702985
Alignment:
Q  28 tacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaataa----ataatacatcaatgacttatattgaggtggtgt 123  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  ||  |||||||||||    ||||||  |||||| ||||||||||||||||||    
T  41702884 tacaccactaaaataacaccttgtaacagcttttttatcataagatccagatcgttagaataaatttataatatgtcaatggcttatattgaggtggtgt 41702983  T
Q  124 aa 125  Q
    ||    
T  41702984 aa 41702985  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 23613099 - 23613051
Alignment:
Q  126 tttatagtgtgtccaatattgttcatattattgtagattgttcctcata 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23613099 tttatagtgtgtccaatattgttcatattattgtagattgttcctcata 23613051  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 53452536 - 53452475
Alignment:
Q  7 actaaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcat 68  Q
    |||||||| |||||| ||||||| |||||||||||||||  |||||| ||||||||||||||    
T  53452536 actaaatagaatgctacaacttataccactaaaataacatattgtaatagcttttttatcat 53452475  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 52470953 - 52470981
Alignment:
Q  140 aatattgttcatattattgtagattgttc 168  Q
    |||||||||||||||||||||||||||||    
T  52470953 aatattgttcatattattgtagattgttc 52470981  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 10040588 - 10040486
Alignment:
Q  27 ttacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaata----aataatacatcaatgacttatattgaggtggtg 122  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||   |||||||||||||    ||||||| ||||||||||||| |||||||||||    
T  10040588 ttacaccactaaaataacaccttgtaacaactttttcatcataagatccggtccgttagaataaattaataatatatcaatgacttattttgaggtggtg 10040489  T
Q  123 taa 125  Q
    |||    
T  10040488 taa 10040486  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 35018998 - 35019111
Alignment:
Q  6 cactaaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaataaat----aatacatca 101  Q
    ||||||||| |||||  |||||||||||||||||||||| ||||||| ||||||||| ||||||||||    |||||||||||||||    |||| ||||    
T  35018998 cactaaatagaatgcctcaacttacaccactaaaataaccctttgtagcagctttttcatcataagatccgatccgttagaataaatttaaaatatatca 35019097  T
Q  102 atgacttatattga 115  Q
    ||| ||||||||||    
T  35019098 atggcttatattga 35019111  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 46170406 - 46170478
Alignment:
Q  1 tacatcactaaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcataagat 73  Q
    |||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  46170406 tacaccactaaatagaatgctccagcttacaccactaaaataacacgttgtaacatcttttttatcgtaagat 46170478  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 12055680 - 12055732
Alignment:
Q  22 ccaacttacaccactaaaataacactttgtaacagcttttttatcataagatt 74  Q
    ||||||||||||||||||||||| ||||||| ||| | ||| |||||||||||    
T  12055680 ccaacttacaccactaaaataactctttgtagcagttatttcatcataagatt 12055732  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 45254015 - 45254051
Alignment:
Q  140 aatattgttcatattattgtagattgttcctcatatt 176  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  45254015 aatattgttcttattattgtagattgttcctcttatt 45254051  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 42943672 - 42943552
Alignment:
Q  9 taaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaataa----ataatacatcaatg 104  Q
    |||||| || ||||||||||||||||||||||||||||  ||||||| |||||| ||||||| ||   |||||||| |||||    |||||| || ||||    
T  42943672 taaatagaacgctccaacttacaccactaaaataacaccctgtaacaactttttcatcataaaatctggtccgttaaaataaatttataatatattaatg 42943573  T
Q  105 acttatattgaggtggtgtaa 125  Q
     ||||||||||||||||||||    
T  42943572 gcttatattgaggtggtgtaa 42943552  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 47308946 - 47309007
Alignment:
Q  133 tgtgtccaatattgttcatattattgtagattgttcctcatattgttgtagattgttcctat 194  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||    
T  47308946 tgtgtccaatattgttcatattattgtggattgttcatcatgttgttgtggattgttcctat 47309007  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 4641924 - 4641813
Alignment:
Q  8 ctaaataaaatgctccaacttacaccactaaaataacactttgtaacagcttttttatcataagat-tgagtccgttagaataaat----aatacatcaa 102  Q
    ||||||||||||||||||||||| | | ||||||||| | ||||| ||||||||| ||||| |||| ||| |||||||||||||||    |||| |||||    
T  4641924 ctaaataaaatgctccaacttacgctaataaaataaccccttgtagcagctttttcatcatgagatctga-tccgttagaataaatttaaaatatatcaa 4641826  T
Q  103 tgacttatattga 115  Q
    |||||||||||||    
T  4641825 tgacttatattga 4641813  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 29525980 - 29525928
Alignment:
Q  20 ctccaacttacaccactaaaataacactttgtaacagcttttttatcataagat 73  Q
    ||||||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  29525980 ctccaacttacaccactaaaataacaccttgtaaca-ctttttcatcataagat 29525928  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 9115156 - 9115047
Alignment:
Q  21 tccaacttacaccactaaaataaca-ctttgtaacagcttttttatcataagattgagtccgttagaataa----ataatacatcaatgacttatattga 115  Q
    ||||||||||||||||||||||||| | |||||||| |||||| |||||||||||  |||| ||| |||||    |||||| |||||||  |||||||||    
T  9115156 tccaacttacaccactaaaataacacccttgtaacatctttttcatcataagattcggtcctttaaaataaatttataatatatcaatggtttatattga 9115057  T
Q  116 ggtggtgtaa 125  Q
    ||||||||||    
T  9115056 ggtggtgtaa 9115047  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 16038891 - 16038841
Alignment:
Q  140 aatattgttcatattattgtagattgttcctcatattgttgtagattgttc 190  Q
    |||||||||| | || || ||||||||||||||| ||||||||||||||||    
T  16038891 aatattgttcttgttgttatagattgttcctcatgttgttgtagattgttc 16038841  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 35661589 - 35661486
Alignment:
Q  25 acttacaccactaaaataacactttgtaacagcttttttatcataagattgagtccgttagaataa----ataatacatcaatgacttatattgaggtgg 120  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||   | |||||| |||||    |||||| ||||||| ||||||||| |||||    
T  35661589 acttacaccactaaaataacaccttgtaacagcttctttatcataagatccggaccgttaaaataaatttataatatatcaatggcttatattg-ggtgg 35661491  T
Q  121 tgtaa 125  Q
    |||||    
T  35661490 tgtaa 35661486  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 17771251 - 17771316
Alignment:
Q  134 gtgtccaatattgttcatattattgtagattgttcctcatattgttgtagattgttcctatcttaa 199  Q
    ||||| |||||||||  |||| |||||||||||||||| ||||||||| ||| |||| ||| ||||    
T  17771251 gtgtcaaatattgtttttattgttgtagattgttcctcctattgttgtggatcgttcatattttaa 17771316  T

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