View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2315_low_2 (Length: 451)

Name: NF2315_low_2
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2315_low_2
NF2315_low_2
[»] chr1 (27 HSPs)
chr1 (79-310)||(46515581-46515812)
chr1 (79-310)||(21972404-21972635)
chr1 (313-442)||(21972228-21972356)
chr1 (79-310)||(5184583-5184815)
chr1 (313-394)||(46515453-46515533)
chr1 (348-437)||(51550427-51550516)
chr1 (153-276)||(24134353-24134477)
chr1 (317-440)||(5184863-5184988)
chr1 (20-70)||(31657803-31657853)
chr1 (79-232)||(30950702-30950857)
chr1 (337-437)||(27696692-27696790)
chr1 (20-71)||(28222940-28222991)
chr1 (337-411)||(29357164-29357237)
chr1 (17-70)||(3157262-3157315)
chr1 (155-235)||(27696486-27696566)
chr1 (20-70)||(50168868-50168918)
chr1 (79-233)||(33240755-33240910)
chr1 (368-407)||(10177733-10177772)
chr1 (315-441)||(47367661-47367789)
chr1 (166-235)||(29358503-29358572)
chr1 (368-442)||(29799170-29799244)
chr1 (337-442)||(10989442-10989546)
chr1 (17-70)||(13784823-13784876)
chr1 (15-63)||(16456324-16456372)
chr1 (168-223)||(10177976-10178030)
chr1 (372-406)||(19313219-19313253)
chr1 (368-437)||(24134151-24134220)
[»] chr5 (16 HSPs)
chr5 (79-310)||(42353132-42353363)
chr5 (79-310)||(14521619-14521852)
chr5 (313-442)||(42352955-42353084)
chr5 (315-442)||(14521439-14521569)
chr5 (79-236)||(16908516-16908675)
chr5 (17-73)||(42427947-42428003)
chr5 (17-70)||(534358-534411)
chr5 (20-70)||(9788740-9788790)
chr5 (20-70)||(16545036-16545086)
chr5 (20-70)||(29720974-29721024)
chr5 (20-70)||(40380715-40380765)
chr5 (337-442)||(3498679-3498783)
chr5 (138-219)||(40360960-40361039)
chr5 (337-435)||(2065659-2065757)
chr5 (20-70)||(26171366-26171416)
chr5 (337-406)||(22098950-22099018)
[»] chr3 (40 HSPs)
chr3 (79-310)||(36312184-36312415)
chr3 (79-310)||(35106385-35106616)
chr3 (315-442)||(36312465-36312591)
chr3 (82-235)||(40785772-40785927)
chr3 (337-440)||(19795443-19795545)
chr3 (86-235)||(29123622-29123774)
chr3 (337-440)||(35061851-35061953)
chr3 (79-223)||(40763873-40764017)
chr3 (79-232)||(37175516-37175679)
chr3 (313-383)||(35106664-35106734)
chr3 (79-236)||(20843081-20843240)
chr3 (20-70)||(22834527-22834577)
chr3 (155-235)||(19795672-19795752)
chr3 (17-70)||(29811468-29811521)
chr3 (20-70)||(4600238-4600288)
chr3 (20-70)||(6717112-6717162)
chr3 (20-70)||(10209800-10209850)
chr3 (20-70)||(37407288-37407338)
chr3 (337-411)||(40785331-40785404)
chr3 (21-70)||(7762870-7762919)
chr3 (17-70)||(23409847-23409900)
chr3 (164-235)||(35062080-35062151)
chr3 (15-70)||(10056844-10056899)
chr3 (15-70)||(10059066-10059121)
chr3 (15-70)||(10061288-10061343)
chr3 (15-70)||(10063510-10063565)
chr3 (15-70)||(10065732-10065787)
chr3 (79-190)||(29648515-29648625)
chr3 (20-70)||(5259841-5259891)
chr3 (20-70)||(9635642-9635692)
chr3 (20-70)||(23199657-23199707)
chr3 (351-408)||(29123426-29123482)
chr3 (372-432)||(20843308-20843368)
chr3 (138-217)||(52403230-52403309)
chr3 (337-411)||(37175332-37175405)
chr3 (369-406)||(16152129-16152166)
chr3 (19-68)||(32891691-32891740)
chr3 (393-442)||(35106720-35106769)
chr3 (150-222)||(11027842-11027913)
chr3 (21-73)||(25634519-25634571)
[»] chr6 (17 HSPs)
chr6 (79-310)||(903916-904147)
chr6 (313-442)||(904195-904323)
chr6 (337-440)||(33224553-33224655)
chr6 (337-440)||(8560088-8560191)
chr6 (155-235)||(8559881-8559961)
chr6 (80-219)||(1780537-1780676)
chr6 (20-70)||(16553275-16553325)
chr6 (20-70)||(16629831-16629881)
chr6 (21-70)||(5408589-5408638)
chr6 (21-70)||(5412914-5412963)
chr6 (79-231)||(29486523-29486677)
chr6 (15-70)||(34165483-34165538)
chr6 (20-70)||(12157918-12157968)
chr6 (168-217)||(22956426-22956475)
chr6 (168-217)||(23831917-23831966)
chr6 (371-411)||(29363903-29363943)
chr6 (368-440)||(29486258-29486330)
[»] chr7 (24 HSPs)
chr7 (79-310)||(20926721-20926952)
chr7 (317-442)||(20927035-20927159)
chr7 (82-296)||(37003762-37003977)
chr7 (86-234)||(4677911-4678061)
chr7 (337-440)||(45855373-45855475)
chr7 (86-235)||(37713069-37713221)
chr7 (86-235)||(27097244-27097396)
chr7 (86-235)||(27180907-27181059)
chr7 (79-236)||(37049151-37049309)
chr7 (80-219)||(28491379-28491518)
chr7 (15-73)||(48490001-48490059)
chr7 (80-219)||(13465522-13465661)
chr7 (79-287)||(34659386-34659596)
chr7 (18-73)||(6570583-6570638)
chr7 (20-70)||(6594052-6594102)
chr7 (20-70)||(18391690-18391740)
chr7 (351-408)||(27097048-27097104)
chr7 (351-408)||(27181199-27181255)
chr7 (17-70)||(47675653-47675706)
chr7 (138-217)||(25592197-25592276)
chr7 (372-406)||(29716057-29716091)
chr7 (79-236)||(40253508-40253669)
chr7 (337-411)||(40253839-40253912)
chr7 (155-235)||(45855602-45855683)
[»] scaffold0271 (2 HSPs)
scaffold0271 (80-310)||(20332-20568)
scaffold0271 (313-442)||(20155-20284)
[»] scaffold0640 (1 HSPs)
scaffold0640 (80-159)||(1-80)
[»] chr4 (24 HSPs)
chr4 (79-236)||(6016704-6016863)
chr4 (337-440)||(16608573-16608675)
chr4 (17-70)||(12743444-12743497)
chr4 (79-236)||(22786072-22786231)
chr4 (79-219)||(21790838-21790978)
chr4 (79-236)||(2407199-2407359)
chr4 (368-442)||(2407061-2407135)
chr4 (20-70)||(5136691-5136741)
chr4 (20-70)||(5872414-5872464)
chr4 (372-442)||(6016931-6017001)
chr4 (20-70)||(7123307-7123357)
chr4 (337-438)||(8762824-8762924)
chr4 (17-73)||(52094878-52094934)
chr4 (138-236)||(17815906-17816005)
chr4 (372-442)||(22785934-22786004)
chr4 (79-193)||(54165834-54165947)
chr4 (155-235)||(16608366-16608446)
chr4 (20-70)||(3578256-3578306)
chr4 (15-69)||(5350501-5350555)
chr4 (20-70)||(8394018-8394067)
chr4 (80-217)||(42318860-42319001)
chr4 (369-442)||(48861790-48861863)
chr4 (17-65)||(4588556-4588604)
chr4 (21-69)||(5207183-5207231)
[»] chr8 (20 HSPs)
chr8 (86-235)||(5808560-5808712)
chr8 (337-440)||(1233751-1233853)
chr8 (79-223)||(12491626-12491770)
chr8 (337-434)||(13641107-13641203)
chr8 (337-434)||(13741519-13741615)
chr8 (17-73)||(4732254-4732310)
chr8 (20-70)||(5591484-5591534)
chr8 (155-235)||(1233544-1233624)
chr8 (351-408)||(5808853-5808909)
chr8 (155-235)||(13640900-13640980)
chr8 (155-235)||(13741312-13741392)
chr8 (83-181)||(32178122-32178225)
chr8 (105-236)||(18881902-18882034)
chr8 (20-70)||(34256025-34256075)
chr8 (162-232)||(25337924-25337994)
chr8 (372-438)||(41570224-41570290)
chr8 (315-411)||(18881323-18881422)
chr8 (368-442)||(32415698-32415772)
chr8 (20-73)||(31577855-31577908)
chr8 (372-404)||(43115042-43115074)
[»] chr2 (11 HSPs)
chr2 (79-219)||(16546418-16546558)
chr2 (80-236)||(42799050-42799209)
chr2 (79-236)||(45655840-45655999)
chr2 (17-69)||(42019394-42019446)
chr2 (372-432)||(45656067-45656127)
chr2 (79-253)||(35524572-35524750)
chr2 (337-411)||(35524908-35524981)
chr2 (150-219)||(4435337-4435405)
chr2 (337-442)||(8230371-8230475)
chr2 (372-435)||(26180469-26180532)
chr2 (175-219)||(39070184-39070228)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-70)||(115202-115252)
[»] scaffold0004 (1 HSPs)
scaffold0004 (155-235)||(212077-212157)
[»] scaffold0361 (1 HSPs)
scaffold0361 (339-442)||(6958-7059)
[»] scaffold1709 (1 HSPs)
scaffold1709 (368-406)||(1317-1355)
[»] scaffold0481 (1 HSPs)
scaffold0481 (315-399)||(6529-6613)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 46515812 - 46515581
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46515812 tttttacttatatgaagtgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaaaaatttgggcaaaacgtattttaagaactcaat 46515713  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  46515712 tttatccatgattgactgtttaataaatagattattaatgtttttcaatgtaaacaaacaagttattttcaaaaacttattgtccttttaatttgtttat 46515613  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
    || ||||||| |||||||||||||||||||||    
T  46515612 aactattgtttgtgaaatattgtctacctata 46515581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 21972635 - 21972404
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||    
T  21972635 tttttacttatatgaagtgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaaaaatttgggcaaaacgtattttaagaagtaaat 21972536  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||    
T  21972535 tttatccataattgactgtttaataaatagattattaatgtttttcaatgtaagcaaacaagttattttcaaaaacttattgtccttttaatttgtttat 21972436  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
    || |||||||  |||| ||||||| |||||||    
T  21972435 aactattgttattgaattattgtcaacctata 21972404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 21972356 - 21972228
Alignment:
Q  313 tgtcaatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatg 412  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  21972356 tgtcaatcatgtagcaatttttt-tcttatttatgctaattttcggcaaaccaagtttatttggggtagctcaatatttattatttggggtagttaaatg 21972258  T
Q  413 taattttataccaaccaattcaagaataat 442  Q
    |||||||||| |||||||||||||||||||    
T  21972257 taattttatatcaaccaattcaagaataat 21972228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 79 - 310
Target Start/End: Original strand, 5184583 - 5184815
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactca 176  Q
    ||||||||||||| |  ||||||| | |||||||||||| ||||||||| ||||||| ||||||||||| || ||||||||| || |||||||| | |||    
T  5184583 tttttacttatataacgtgtaaattagagcaacaacaaacgaaataaaaattgacaacaaatatttaaaaaagttgggcaaa-cgcattttaaggagtca 5184681  T
Q  177 attttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtt 275  Q
    ||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||  || |||||||  |||||||||||||||    
T  5184682 attttatgcataattgactgtt-aataaatagattattaatgtcttttcaatgtaaacaaacaagttatttctaataacttattgtccttttaatttgtt 5184780  T
Q  276 tataattattgttggtgaaatattgtctacctata 310  Q
    | ||| | || ||| ||||||||| ||||||||||    
T  5184781 tctaactgttattgttgaaatattttctacctata 5184815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 313 - 394
Target Start/End: Complemental strand, 46515533 - 46515453
Alignment:
Q  313 tgtcaatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttatt 394  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46515533 tgtcaatcatgtagcaatttttt-tcttatttatgctaattttcgacaaaccaaatttatttggggtagctcaatatttatt 46515453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 51550427 - 51550516
Alignment:
Q  348 ctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaaga 437  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||| ||||    
T  51550427 ctaattttcggcaaaccaagcttatttggggtagctcaatatttattattttgggtagctaaatgtaaatatataccaaccaatttaaga 51550516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 24134477 - 24134353
Alignment:
Q  153 ggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaaactagttattttcaaa 251  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||   ||||||| |||     
T  24134477 ggcaaaatatattttaagaagtcaattttatccataattgactatttgataaaaagattattaatgttttttaaatgtaaacaaatatgttatttgcaag 24134378  T
Q  252 aacttatcttccttttaatttgttt 276  Q
    |||||||  ||| ||| ||||||||    
T  24134377 aacttattatccatttcatttgttt 24134353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 5184863 - 5184988
Alignment:
Q  317 aatcatgtagcaattttt---tatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgt 413  Q
    ||||||||||||||||||   | || |||||||||||||||| ||||| | || || |||| ||||| ||||||||||||||||||| |||||||||| |    
T  5184863 aatcatgtagcaatttttctttttcgtatttatgctaattttagacaaccgaactt-atttagggtaactcaatatttattatttggggtagctaaatat 5184961  T
Q  414 aattttataccaaccaattcaagaata 440  Q
    || |  |||||||||| ||||||||||    
T  5184962 aaatagataccaaccagttcaagaata 5184988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 31657853 - 31657803
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31657853 ggttccttcacgacatccctcaaaactttgtcaccgaggcacaagacaatg 31657803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 30950702 - 30950857
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||||||| | | || ||||||| || | ||||||||||| |  |||||||| || ||| | |||| | |||| |||||  |||    
T  30950702 tttttacttatatgaaatgtaaattaaaacatcaacaaaggata-aaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaa 30950800  T
Q  178 ttttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaa 232  Q
    |||||||||||||||||  |||| ||||||||||| |||||  ||||||||||||||    
T  30950801 ttttatccataattgaccgtttactaaatagattaataatgtctttttcaatgtaaa 30950857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 27696692 - 27696790
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| |||| |||| ||| |||| |||||||  |||||||||||||||||||||||| |||||||||| ||| | |||| |||||||||||||    
T  27696692 tcttatttatgttaatattcggcaa-ccaaatttatttaaggtagctcaatatttattatttgg-gtagctaaatataaatatatatcaaccaattcaag 27696789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 28222940 - 28222991
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatga 71  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28222940 ggttccttcgcgacatccctcaaaactttgtcaccgaggcacaagacaatga 28222991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 29357237 - 29357164
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    ||||||||||| ||||||||| ||| | ||  |||||||||||||||||||||||||||||||| ||||||||||    
T  29357237 tcttatttatgttaattttcggcaa-ctaaacttatttggggtagctcaatatttattatttggggtagctaaat 29357164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 3157315 - 3157262
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  3157315 gtaggttccttcgcgacatccctcaaaactttgccaccgaggcacaagacaatg 3157262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 27696486 - 27696566
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  27696486 caaaacatgttttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 27696566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 50168868 - 50168918
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  50168868 ggttccttcgcgacatccctcaaaactttgtcactgaggcacaagacaatg 50168918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 33240755 - 33240910
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||||||||||| | ||||| |||||| || | ||| |||||||      ||| | ||||| | ||||| | ||||||| ||  ||||    
T  33240755 tttttacttatatgaaatgtaaattaaagcaagaacaaaggatagaaa-ttgacaatggctattagaaaatttagacaaaatgcattttaaaaaaccaat 33240853  T
Q  179 tttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaac 233  Q
    ||||||||||||||| | |||||||||||||||| |||||  |||| ||||||||||    
T  33240854 tttatccataattgagtgtttaataaatagattaataatgtattttccaatgtaaac 33240910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 10177772 - 10177733
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagct 407  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  10177772 tttatttagggtagctcaatatttattatttggagtagct 10177733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 441
Target Start/End: Complemental strand, 47367789 - 47367661
Alignment:
Q  315 tcaatcatgtagcaatttttta---tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    |||||||||||| |||||||||   |||||| ||||||||||||||||||    | | | |||||||||||||||| |||||||||||  ||||| ||||    
T  47367789 tcaatcatgtagtaattttttactttcttatatatgctaattttcgacaattgga-tatgtttggggtagctcaatgtttattatttgaggtagcaaaat 47367691  T
Q  412 gtaattttataccaaccaattcaagaataa 441  Q
     ||| |  |||||||| ||||||| |||||    
T  47367690 ataaatacataccaactaattcaacaataa 47367661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 29358572 - 29358503
Alignment:
Q  166 ttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    ||||||| ||| |||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  29358572 ttaagaagtcacttttatccataattgattctttaataaa-agattactaatgtcttttcaatgtaaacaa 29358503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 29799170 - 29799244
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    ||||||||| ||| |||||| |||||||||||| |||||  ||| ||| |||||||||||||||| |||| ||||    
T  29799170 tttatttggagtaactcaatgtttattatttggggtagccgaatataaatttataccaaccaattaaagattaat 29799244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 10989442 - 10989546
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| |||||||  |||||  || ||| |||||||||||| ||||||| |||||||| |||||||||| |||    ||||||||  |||||||    
T  10989442 tcttatttatgttaatttttaacaaataaa-tttgtttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaag 10989540  T
Q  437 aataat 442  Q
    ||||||    
T  10989541 aataat 10989546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 13784823 - 13784876
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||||||| ||||||||||||||| ||| || | ||||||||||||||||    
T  13784823 gtaggttccttcgcgacatccctcaaaattttatctctgaggcacaagacaatg 13784876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 16456372 - 16456324
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaa 63  Q
    |||| ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  16456372 cagttggttccttcgcgacatccctcaaaaatttgtcaccgaggcacaa 16456324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 10178030 - 10177976
Alignment:
Q  168 aagaactcaattttatccataattgactatttaataaatagattattaatgttttt 223  Q
    ||||||||||||| ||| |||||||||| |||||| ||||||||| ||||||||||    
T  10178030 aagaactcaatttcatcaataattgactgtttaat-aatagattaataatgttttt 10177976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 406
Target Start/End: Complemental strand, 19313253 - 19313219
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagc 406  Q
    ||||||||||||||||||||||||||||| |||||    
T  19313253 tttggggtagctcaatatttattatttggggtagc 19313219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 24134220 - 24134151
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaaga 437  Q
    ||||||| || |||||||||||||||||||||  |||||||||| ||| |  |||||||| |||| ||||    
T  24134220 tttatttaggttagctcaatatttattatttgaggtagctaaatataaataaataccaacaaatttaaga 24134151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 42353363 - 42353132
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||    
T  42353363 tttttacttatatgaagtgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaaaaatttgggcaaaacgtattttatgaagtcaat 42353264  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| |||||||    
T  42353263 tttatccataattgactgtttaataaatagattattaatgtttttcaatgtaaacaaacaagttattttcaaaaacttattgtccttttaatctgtttat 42353164  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
    || |||||||| |||||||||||||| |||||    
T  42353163 aactattgttgttgaaatattgtctatctata 42353132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 79 - 310
Target Start/End: Complemental strand, 14521852 - 14521619
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||||||   ||||||||||||  |||||||||| || |    
T  14521852 tttttacttatatgaagtataaattagagcaacaacaaatgaaataaaaattgacaaaaatatttaaattttttgggcaaaacacattttaagaagtcta 14521753  T
Q  178 ttttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgttt 276  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||| |||||||  | ||||||||||||||    
T  14521752 ttttatccataattgactgtttaataaatatattattaatgttttttcaatgtaaacaaacaagttatttgcaacaacttattgtacttttaatttgttt 14521653  T
Q  277 ataattattgttggtgaaatattgtctacctata 310  Q
    |||| |||||||| ||||||||| ||||||||||    
T  14521652 ataactattgttgttgaaatattttctacctata 14521619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 42353084 - 42352955
Alignment:
Q  313 tgtcaatcatgtagcaattttttat-cttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42353084 tgtcaatcatgtagcaatttttttttcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 42352985  T
Q  412 gtaattttataccaaccaattcaagaataat 442  Q
    ||||||||||| |||||||||||||||||||    
T  42352984 gtaattttata-caaccaattcaagaataat 42352955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 14521569 - 14521439
Alignment:
Q  315 tcaatcatgtagcaatttttta---tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    |||||||||||| ||||||||    ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||  |||||||||    
T  14521569 tcaatcatgtagtaatttttttccttcttatttatgctaatttttgacaaaccaaatttatttggggtaactcaatatttattatttgggatagctaaat 14521470  T
Q  412 gtaattttataccaaccaattcaagaataat 442  Q
    ||||||||||||  | |||||||||||||||    
T  14521469 gtaattttatactgatcaattcaagaataat 14521439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 16908516 - 16908675
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||||||| | |||||||||||| || | ||||||||||| || |||||| | || ||||| |||| | |||| || ||  |||    
T  16908516 tttttacttatatgaaatgtaaattaaagcaacaacaaaggata-aaaattgacaataattatttagaaaagttgggtaaaatgcatttcaaaaagccaa 16908614  T
Q  178 ttttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
     ||||||||||||||||| |||| ||||||||||| |||||  ||||||||||||||||||    
T  16908615 atttatccataattgactgtttactaaatagattaataatgtatttttcaatgtaaacaaa 16908675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 42427947 - 42428003
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||    
T  42427947 gtaggttccttcgcgacatccctcaaaactttgtcaccaaggcacaagacaatgaca 42428003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 534411 - 534358
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  534411 gtaggttccttcgggacatccctcaaaactttgtcaccgaggcacaagacaatg 534358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 9788740 - 9788790
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  9788740 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 9788790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 16545086 - 16545036
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  16545086 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 16545036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 29721024 - 29720974
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  29721024 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 29720974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 40380765 - 40380715
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  40380765 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 40380715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 3498679 - 3498783
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| |||||||  |||||  || |||||||||||||||| ||||||| |||||||| |||||||||| |||    ||||||||  |||||||    
T  3498679 tcttatttatgttaatttttaacaaataaa-tttatttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaag 3498777  T
Q  437 aataat 442  Q
    ||||||    
T  3498778 aataat 3498783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 40360960 - 40361039
Alignment:
Q  138 tatttaaacaatttgggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt 219  Q
    |||||||| ||||||||||||| |  ||| ||||  |||||||||||||||||||||| ||||  |||||||||| ||||||    
T  40360960 tatttaaaaaatttgggcaaaatgcttttcaaga--tcaattttatccataattgactgtttacaaaatagattaataatgt 40361039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 2065659 - 2065757
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatattt-attatttggagtagctaaatgtaattttataccaaccaattcaa 435  Q
    |||||||||| |||||||||||||| | ||  ||||||  |||| |||||||||| ||||||| |||||||||||| ||| || |||| ||| |||||||    
T  2065659 tcttatttatactaattttcgacaa-ctaaacttatttaaggtaactcaatattttattatttagagtagctaaatataaattgatactaactaattcaa 2065757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 26171416 - 26171366
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| |||||||||| |||||||| ||  |||||||||||||||||    
T  26171416 ggttccttcgcgacatcccttaaaactttgtcctcgaggcacaagacaatg 26171366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 22099018 - 22098950
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagc 406  Q
    ||||||||||  ||||||||||||| | ||  || |||||||||||||||||||| |||||||| |||||    
T  22099018 tcttatttatcttaattttcgacaa-ctaaacttgtttggggtagctcaatattttttatttggggtagc 22098950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 79 - 310
Target Start/End: Original strand, 36312184 - 36312415
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | |||    
T  36312184 tttttacttatatgaagtgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaaaaatttgggcaaaacatattttaagaagtaaat 36312283  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||| ||||||||||    
T  36312284 tttatccataattgactgtttaataaatagattattaatgtttttcaatgtaaacaaacaagttatttttaaaaacttattgtccttttcatttgtttat 36312383  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
    || |||||||  ||||||||||||||||||||    
T  36312384 aactattgttattgaaatattgtctacctata 36312415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 79 - 310
Target Start/End: Original strand, 35106385 - 35106616
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||    
T  35106385 tttttacttatatgaagtgtaaattatagcaacaacaaatgaaataaaattgacaaaagtatttaaaaaatttgggcaaaacatattttaagaagtcaat 35106484  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||  || ||||||||||||||||  ||||||||||||||||||    
T  35106485 tttatccataattgactgtttaataaatagattattaatgtttttcaatgtaaagaaacaggtaattttcaaaaacttattgtccttttaatttgtttat 35106584  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
    || |||||||| ||||||||||||||||||||    
T  35106585 aactattgttgttgaaatattgtctacctata 35106616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 36312465 - 36312591
Alignment:
Q  315 tcaatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgta 414  Q
    ||||||||||||||||||||  ||||| ||||||||||||| | |||||||| |||||||| ||||||| |||||||||||||||  |||||||||||||    
T  36312465 tcaatcatgtagcaatttttg-tcttacttatgctaatttttggcaaaccaaatttatttgaggtagcttaatatttattatttgaggtagctaaatgta 36312563  T
Q  415 attttataccaaccaattcaagaataat 442  Q
    |||||||| |||||||||||||||||||    
T  36312564 attttatatcaaccaattcaagaataat 36312591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 40785927 - 40785772
Alignment:
Q  82 ttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaatt 179  Q
    |||||||||||||||||||||   |||||||||| ||||||||||| ||||||| ||||||||||  ||||||| |||||||| ||||||||| ||||||    
T  40785927 ttacttatatgaaatgtaaattcaagcaacaacagatgaaataaaaattgacaacaaatatttaataaatttggacaaaacgtgttttaagaagtcaatt 40785828  T
Q  180 ttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||||||||| | | ||||||||| ||||||||||||| ||||||||||||||||    
T  40785827 ttatccataattaattgtttaataaa-agattattaatgtcttttcaatgtaaacaa 40785772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 337 - 440
Target Start/End: Complemental strand, 19795545 - 19795443
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  19795545 tcttatttatgttaattttcgacaa-ccaaacttgtttggggtagctcaatatttattatttggagtagctaaatataaatatataccaaccaattcaag 19795447  T
Q  437 aata 440  Q
    ||||    
T  19795446 aata 19795443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 29123774 - 29123622
Alignment:
Q  86 ttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaattttat 183  Q
    |||||||||||||||||   |||||||||||||||||||||| ||||||| |||| || ||| || ||||||||||| |||||||||||  | |||||||    
T  29123774 ttatatgaaatgtaaattcaagcaacaacaaatgaaataaaaattgacaataaatgttaaaaaaagttgggcaaaacatattttaagaagccgattttat 29123675  T
Q  184 ccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
     ||||||||| | || |||||| ||||| ||||||| ||||||||||||||||    
T  29123674 tcataattgattgttaaataaaaagattgttaatgtcttttcaatgtaaacaa 29123622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 440
Target Start/End: Complemental strand, 35061953 - 35061851
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| ||||||||||||| ||||  |||||| | ||||||||||||||||||||||  |||||||||| ||| | ||||||||||||||||||    
T  35061953 tcttatttatgttaattttcgacaa-ccaaacttatttagagtagctcaatatttattatttgaggtagctaaatataaatatataccaaccaattcaag 35061855  T
Q  437 aata 440  Q
    ||||    
T  35061854 aata 35061851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 40764017 - 40763873
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||||||| | |||| ||||||| || | ||||||||||| |  |||||||| || ||| | |||| | |||| |||||  |||    
T  40764017 tttttacttatatgaaatgtaaattaaagcatcaacaaaggata-aaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaa 40763919  T
Q  178 ttttatccataattgactatttaataaatagattattaatgttttt 223  Q
    |||||||||||||||||  |||| ||||||||||| ||||||||||    
T  40763918 ttttatccataattgaccgtttactaaatagattaataatgttttt 40763873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 37175679 - 37175516
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaaca------aatgaaata-aaattgacaa-aaatatttaaacaat-ttgggcaaaacgtattttaa 169  Q
    ||||| |||||||||||||||||||| || |||||||      ||||||||| ||| |||||| ||||||||||| ||  ||||||| ||||| ||||||    
T  37175679 ttttttcttatatgaaatgtaaatcaaagtaacaacagcaacaaatgaaatacaaactgacaacaaatatttaaaaaaagttgggcataacgtgttttaa 37175580  T
Q  170 gaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaa 232  Q
    ||| | |||||||||||||||| | |  |||||||||||||||||||||| |||| ||||||||    
T  37175579 gaagttaattttatccataattaaatgattaataaatagattattaatgtctttttaatgtaaa 37175516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 35106664 - 35106734
Alignment:
Q  313 tgtcaatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagct 383  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | |||||| | |||||||||| |||||    
T  35106664 tgtcaatcatgtagcaattttttttcttatttatgctaatttttggcaaaccgaatttatttgggatagct 35106734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 20843081 - 20843240
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    ||||||||||||| |||||||||| | |||||||||||| || | | |||| |||| |  |||||||| || ||||| |||| | |||| |||||  |||    
T  20843081 tttttacttatatcaaatgtaaattaaagcaacaacaaaggata-agaattaacaatagctatttaaaaaagttgggtaaaatgcatttcaagaagccaa 20843179  T
Q  178 ttttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
    ||||||||||||| ||| ||||| ||||||||||| |||||  |||| |||||||||||||    
T  20843180 ttttatccataatagaccatttactaaatagattaataatgtcttttccaatgtaaacaaa 20843240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 22834527 - 22834577
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  22834527 ggttccttcgcgacatccctcaaaactttatcaccgaggcacaagacaatg 22834577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 19795752 - 19795672
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  19795752 caaaacatgttttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 19795672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 29811521 - 29811468
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  29811521 gtaggttccttagcgacatccctcaaaactttgtcaccgaggcacaagacaatg 29811468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 4600238 - 4600288
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  4600238 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 4600288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 6717162 - 6717112
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  6717162 ggttccttcgcgacatccctcaaaactttatccccgaggcacaagacaatg 6717112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 10209850 - 10209800
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  10209850 ggttccttcgcgacatccctcaaaactttatccccgaggcacaagacaatg 10209800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 37407338 - 37407288
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  37407338 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 37407288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 40785404 - 40785331
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    |||||| ||||| |||||||| ||| |||| |||||||| |||||||||||||||||||||||  ||||||||||    
T  40785404 tcttatctatgcaaattttcggcaa-ccaaatttatttgaggtagctcaatatttattatttgaggtagctaaat 40785331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7762919 - 7762870
Alignment:
Q  21 gttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  7762919 gttccttcgcgacatcccttaaaactttgtcaccgaggcacaagacaatg 7762870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 23409847 - 23409900
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||||||| ||||||||||||||||||| || |||||| |||||||||||    
T  23409847 gtaggttccttcgcgacatccctcaaaactttgtccccgaggtacaagacaatg 23409900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 35062151 - 35062080
Alignment:
Q  164 ttttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    ||||||||| |||||||||||||||||||| | ||||||||| |||||| ||| || ||||||||||||||||    
T  35062151 ttttaagaagtcaattttatccataattgattgtttaataaa-agattactaacgtcttttcaatgtaaacaa 35062080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10056899 - 10056844
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  10056899 cagttggttccttcgcgacatccctcaaaactttgtccccgaggcacaggacaatg 10056844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10059121 - 10059066
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  10059121 cagttggttccttcgcgacatccctcaaaactttgtccccgaggcacaggacaatg 10059066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10061343 - 10061288
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  10061343 cagttggttccttcgcgacatccctcaaaactttgtccccgaggcacaggacaatg 10061288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10063565 - 10063510
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  10063565 cagttggttccttcgcgacatccctcaaaactttgtccccgaggcacaggacaatg 10063510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10065787 - 10065732
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  10065787 cagttggttccttcgcgacatccctcaaaactttgtccccgaggcacaggacaatg 10065732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 29648625 - 29648515
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    ||||||||| |||||||||||||| | | |||||||||| |||  ||||||||||| | |  ||| | || ||| |||||| | |||||||||| |||||    
T  29648625 tttttacttctatgaaatgtaaattaaaacaacaacaaa-gaataaaaattgacaatagttattagaaaagttgagcaaaatggattttaagaagtcaat 29648527  T
Q  179 tttatccataat 190  Q
    ||||||||||||    
T  29648526 tttatccataat 29648515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 5259841 - 5259891
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| |||||||||| |||||||||||  |||||||||||||||||    
T  5259841 ggttccttcgcgacatcccttaaaactttttcctcgaggcacaagacaatg 5259891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 9635642 - 9635692
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || |||||||| |||||||||    
T  9635642 ggttccttcgcgacatccctcaaaactttgtccccgaggcataagacaatg 9635692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 23199657 - 23199707
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  23199657 ggttccttcgcaacatccctcaaaactttgtccccgaggcacaagacaatg 23199707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 29123482 - 29123426
Alignment:
Q  351 attttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagcta 408  Q
    ||||||||||| | || |||||||||| |||||||||||||||||||||| |||||||    
T  29123482 attttcgacaa-cgaaatttatttgggatagctcaatatttattatttggggtagcta 29123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 20843308 - 20843368
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaatt 432  Q
    |||||||||||||||| |||||||||||| |||||  ||  ||| ||||||||||||||||    
T  20843308 tttggggtagctcaatgtttattatttggggtagccgaaaataaatttataccaaccaatt 20843368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 52403230 - 52403309
Alignment:
Q  138 tatttaaacaatttgggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaat 217  Q
    |||||||| || ||||  |||| || ||| |||||| ||||||||||||||| ||||||||||  |||||||||| ||||    
T  52403230 tatttaaaaaagttggataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataat 52403309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 37175405 - 37175332
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    |||||||||||||||||||| |||||| || ||  ||||  ||| || ||||||||||||||||||||| |||||    
T  37175405 tcttatttatgctaattttcaacaaacaaaattg-tttgaagtatctaaatatttattatttggagtagttaaat 37175332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 406
Target Start/End: Complemental strand, 16152166 - 16152129
Alignment:
Q  369 ttatttggggtagctcaatatttattatttggagtagc 406  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  16152166 ttatttggggtagctcaatgtttattatttggggtagc 16152129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 32891740 - 32891691
Alignment:
Q  19 aggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaa 68  Q
    |||||||||| |||||||||| |||  ||| |||||||||||||||||||    
T  32891740 aggttccttcgcgacatccctaaaatttttatcaccgaggcacaagacaa 32891691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 35106720 - 35106769
Alignment:
Q  393 ttatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    ||||||||  ||||||||||||||||||||| ||  ||||||||||||||    
T  35106720 ttatttgggatagctaaatgtaattttatacaaattaattcaagaataat 35106769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 11027842 - 11027913
Alignment:
Q  150 ttgggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgtttt 222  Q
    ||||||||||   |||| ||||||||||||| ||| ||||||| || |||||| ||||||||| |||||||||    
T  11027842 ttgggcaaaatacatttgaagaactcaatttcatcaataattgtctgtttaat-aatagattaataatgtttt 11027913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 25634571 - 25634519
Alignment:
Q  21 gttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    |||||||| | || || ||||||||||| || |||||||||||||||||||||    
T  25634571 gttccttcgctacttctctcaaaactttatccccgaggcacaagacaatgaca 25634519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 79 - 310
Target Start/End: Original strand, 903916 - 904147
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||| | |||    
T  903916 tttttacttatatgaagtgtaaatcatagcaacaacaaatgaaataaaattgacgaaaatatttaaaaaatgtgggcaaaatgtattttaagaagtaaat 904015  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  904016 tttatccataattgaccgtttaataaataaattattaatgtttttcaatgtaaacaaacaagttattttcaaaaacttattgtccttttaatttgtttat 904115  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
    || |||||||  |||||||||||| |||||||    
T  904116 aactattgttattgaaatattgtcaacctata 904147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 904195 - 904323
Alignment:
Q  313 tgtcaatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatg 412  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  904195 tgtcaatcatgtagcaatttttt-tcttatttatgctaattttcggcaaaccaagtttatttggggtagctcaatatttattatttggggtagctaaatg 904293  T
Q  413 taattttataccaaccaattcaagaataat 442  Q
    |||||||||| |||||||||||||||||||    
T  904294 taattttatatcaaccaattcaagaataat 904323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 337 - 440
Target Start/End: Complemental strand, 33224655 - 33224553
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| ||||||||||||| ||||  || ||| ||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||| |||    
T  33224655 tcttatttatgttaattttcgacaa-ccaaacttgtttagggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaatttaag 33224557  T
Q  437 aata 440  Q
    ||||    
T  33224556 aata 33224553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 8560088 - 8560191
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaac-caattcaa 435  Q
    ||||||||||| ||||||||| ||| ||||  |||||||||||||||||||||||||||||||| || ||||||| ||| | |||||||||  |||||||    
T  8560088 tcttatttatgttaattttcggcaa-ccaaacttatttggggtagctcaatatttattatttggggtggctaaatataaatatataccaacaaaattcaa 8560186  T
Q  436 gaata 440  Q
    |||||    
T  8560187 gaata 8560191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 8559881 - 8559961
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  8559881 caaaacatgttttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 8559961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 1780537 - 1780676
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    ||||||||||||||||||||||| | |||| ||||||| || | ||||||||| | |  |||||||| || ||| | |||| | |||| |||||  ||||    
T  1780537 ttttacttatatgaaatgtaaattaaagcatcaacaaaggata-aaaattgacgatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaat 1780635  T
Q  179 tttatccataattgactatttaataaatagattattaatgt 219  Q
    ||||||||||||||||  |||| ||||||||||| ||||||    
T  1780636 tttatccataattgaccgtttactaaatagattaataatgt 1780676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 16553325 - 16553275
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  16553325 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 16553275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 16629881 - 16629831
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  16629881 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 16629831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 5408589 - 5408638
Alignment:
Q  21 gttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  5408589 gttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 5408638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 5412914 - 5412963
Alignment:
Q  21 gttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  5412914 gttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 5412963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 29486677 - 29486523
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaat-atttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||| |||||||||||   ||||||||||||||| | ||||||||||| | | ||||| | || ||| |  |||   |||| ||||| ||||    
T  29486677 tttttacttataagaaatgtaaattgaagcaacaacaaatgata-aaaattgacaatagttatttagaaaagttgtggcaaatacatttcaagaagtcaa 29486579  T
Q  178 ttttatccataattgactatttaataaatagattatta--atgtttttcaatgtaa 231  Q
     ||||||||||||||||  |||| ||||||||||||||  || |||||||||||||    
T  29486578 atttatccataattgaccgtttactaaatagattattaatatatttttcaatgtaa 29486523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 34165538 - 34165483
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||| |||||||    
T  34165538 cagttggttccttcgcgacatccctcaaaactttgtccccgaggcacaggacaatg 34165483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 12157968 - 12157918
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||  ||||||||| |||||||||||| |||||||| |||||||||    
T  12157968 ggttccttagcgacatcccccaaaactttttccccgaggcataagacaatg 12157918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 22956426 - 22956475
Alignment:
Q  168 aagaactcaattttatccataattgactatttaataaatagattattaat 217  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||| ||||    
T  22956426 aagaacccaattttatccataaatgactatttacaaaatagattaataat 22956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 23831966 - 23831917
Alignment:
Q  168 aagaactcaattttatccataattgactatttaataaatagattattaat 217  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||| ||||    
T  23831966 aagaacccaattttatccataaatgactatttacaaaatagattaataat 23831917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 29363903 - 29363943
Alignment:
Q  371 atttggggtagctcaatatttattatttggagtagctaaat 411  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  29363903 atttggggtagctaaatatatattattaggagtagctaaat 29363943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 29486330 - 29486258
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaata 440  Q
    |||||||||  |||||| || |||||||||||  ||||| | || |||||||||||||| ||||| |||||||    
T  29486330 tttatttggaatagctcgatgtttattatttgaggtagccagatataattttataccaaacaattgaagaata 29486258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 79 - 310
Target Start/End: Original strand, 20926721 - 20926952
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| | |||    
T  20926721 tttttacttatatgaagtgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaaatttttgggcaaaacgtattttaagaagtaaat 20926820  T
Q  179 tttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttat 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||    
T  20926821 tttatccataattgactgtttaataaatagattattaatgttttttaatgtaaacaaacaagttattttgaaaaacttattgtccttttaatttgattat 20926920  T
Q  279 aattattgttggtgaaatattgtctacctata 310  Q
     | |||||||  ||||||||| ||||||||||    
T  20926921 gactattgttattgaaatattatctacctata 20926952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 317 - 442
Target Start/End: Original strand, 20927035 - 20927159
Alignment:
Q  317 aatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaat 416  Q
    |||||||||||||||| || |||||||||| |||||||||| ||||  || ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  20927035 aatcatgtagcaatttatt-tcttatttatactaattttcggcaaagtaaatttatttggggtagctcaatatttattatttggggtaactaaatgtaat 20927133  T
Q  417 tttataccaaccaattcaagaataat 442  Q
    |||||| |||||||||||||||||||    
T  20927134 tttatatcaaccaattcaagaataat 20927159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 82 - 296
Target Start/End: Complemental strand, 37003977 - 37003762
Alignment:
Q  82 ttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaatt 179  Q
    |||||||||||||| ||||||   |||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||| ||||||||| | ||||    
T  37003977 ttacttatatgaaacgtaaattgaagcaacaacaaatgaaataaaaattgacaataaatatttaaaaaagttgggcaaaacgtgttttaagaaattaatt 37003878  T
Q  180 ttatccataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttttaatttgtttata 279  Q
    |||| |||| |||| | |||||| || ||||||||||||| ||||||||||||| ||  ||||||||  || |||||||  ||| ||| |||||||| |     
T  37003877 ttattcatagttgattgtttaatgaaaagattattaatgtgtttcaatgtaaac-aataagttatttgtaataacttattatccatttcatttgtttctt 37003779  T
Q  280 attattgttggtgaaat 296  Q
    |||||||||| ||||||    
T  37003778 attattgttgttgaaat 37003762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 4677911 - 4678061
Alignment:
Q  86 ttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaattttat 183  Q
    |||||||||||||||||   |||||||||||||||||||||| ||||||| ||||||||||  ||||||| |||||||| ||||||||| ||||||||||    
T  4677911 ttatatgaaatgtaaattcaagcaacaacaaatgaaataaaaattgacaacaaatatttaataaatttggacaaaacgtgttttaagaagtcaattttat 4678010  T
Q  184 ccataattgactatttaataaatagattattaatgt-ttttcaatgtaaaca 234  Q
    |||||||| | ||||||||||| ||||||||||||| |||||||||||||||    
T  4678011 ccataattaattatttaataaa-agattattaatgtcttttcaatgtaaaca 4678061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 440
Target Start/End: Complemental strand, 45855475 - 45855373
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||| ||| | |||||| |||||||||||    
T  45855475 tcttatttatgttaattttcgacaa-ccaaacttatttggggtagctcaatatttattatttggggtagctaaatataaatatataccgaccaattcaag 45855377  T
Q  437 aata 440  Q
    ||||    
T  45855376 aata 45855373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 37713221 - 37713069
Alignment:
Q  86 ttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaattttat 183  Q
    |||||||||||||||||   |||||||||||||||||||||| ||||||| |||| || ||| || ||||||||||| |||||||||||  | |||||||    
T  37713221 ttatatgaaatgtaaattcaagcaacaacaaatgaaataaaaattgacaataaatgttaaaaaaagttgggcaaaacatattttaagaagccgattttat 37713122  T
Q  184 ccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
     ||||||||| | || |||||| ||||| ||||||| ||||||||||||||||    
T  37713121 tcataattgattgttaaataaaaagattgttaatgtcttttcaatgtaaacaa 37713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 27097396 - 27097244
Alignment:
Q  86 ttatatgaaatgtaaatcatagcaacaacaaatgaaataaaa-ttgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaattttat 183  Q
    |||||||||||||||||   |||||||||||||||||||||| ||||||| |||| || ||| || ||||||||||| |||||||||||  | |||||||    
T  27097396 ttatatgaaatgtaaattcaagcaacaacaaatgaaataaaaattgacaacaaatgttaaaaaaagttgggcaaaacatattttaagaagccgattttat 27097297  T
Q  184 ccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
     ||||||||| | || |||||| ||||| ||||||| ||||||| ||||||||    
T  27097296 tcataattgattgttaaataaaaagattgttaatgtcttttcaacgtaaacaa 27097244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 27180907 - 27181059
Alignment:
Q  86 ttatatgaaatgtaaatcatagcaacaacaaatgaaat-aaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaattttat 183  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||| |||| || ||| || ||||||||||| |||||||||||  | |||||||    
T  27180907 ttatatgaaatgtaaattcaagcaacaacaaatgaaataaaaattgacaacaaatgttaaaaaaagttgggcaaaacatattttaagaagccgattttat 27181006  T
Q  184 ccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
     ||||||||| | || |||||| ||||| ||||||| ||||||| ||||||||    
T  27181007 tcataattgattgttaaataaaaagattgttaatgtcttttcaacgtaaacaa 27181059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 37049309 - 37049151
Alignment:
Q  79 tttttacttatatgaaatgtaaat-catagcaacaacaaatgaaat-aaaattgacaa-aaatatttaaacaatttgggcaaaacgt-attttaagaact 174  Q
    |||||||||||||||||||||||| ||    ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |  |||||||||      
T  37049309 tttttacttatatgaaatgtaaattca----aacaacaaatgaaataaaaattgacaacaaatatttaaaaaagttgggcaaaacatgtttttaagaagc 37049214  T
Q  175 caattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaaa 236  Q
    |||||||||   ||||| ||| ||||||||| |||||| |||||| |||||||||||||||||    
T  37049213 caattttatttgtaattaactgtttaataaaaagattaataatgtcttttcaatgtaaacaaa 37049151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 28491518 - 28491379
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    ||||||||||||||||||||||| | |||| ||||||| || | ||||||||||| |  |||||||| |||||| | |||| | |||| |||||  ||||    
T  28491518 ttttacttatatgaaatgtaaattaaagcatcaacaaaggata-aaaattgacaatagctatttaaaaaatttgtgtaaaatgcatttcaagaaaccaat 28491420  T
Q  179 tttatccataattgactatttaataaatagattattaatgt 219  Q
    ||||||||||||||||  |||| ||||||||||| ||||||    
T  28491419 tttatccataattgaccgtttactaaatagattaataatgt 28491379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 48490059 - 48490001
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||    
T  48490059 cagtaggttccttcgcgacatccctcaatactttgtcaccgaggcacaagacaatgaca 48490001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 13465661 - 13465522
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    ||||||||||||||||||||||| | |||| ||||||| || | ||||||||||| |  |||||||| || ||| | |||| | |||| |||||  ||||    
T  13465661 ttttacttatatgaaatgtaaattaaagcatcaacaaaggata-aaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaat 13465563  T
Q  179 tttatccataattgactatttaataaatagattattaatgt 219  Q
    ||||||||||||||||  |||| ||||||||||| ||||||    
T  13465562 tttatccataattgaccgtttactaaatagattaataatgt 13465522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 287
Target Start/End: Complemental strand, 34659596 - 34659386
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||||||||||||| || ||||||||| || | |||||| ||||      ||| | ||||||| ||||| | |||| |||||  ||||    
T  34659596 tttttacttatatgaaatgtaaatcaaagtaacaacaaaggaca-aaaatttacaatggctattagaaaatttggacaaaatgcatttcaagaaaccaat 34659498  T
Q  179 tttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaactagttattttcaa-aaacttatcttccttttaatttgtt 275  Q
    |||||| |||||||| | |||| ||||||||||| |||||  ||||| ||||||||| ||  |||||||| ||| ||||| ||  ||| |||||||||||    
T  34659497 tttatctataattgagtgtttactaaatagattaataatgtatttttaaatgtaaactaataagttatttgcaataaactcattatccatttaatttgtt 34659398  T
Q  276 tataattattgt 287  Q
    ||| | ||||||    
T  34659397 tatgactattgt 34659386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 6570638 - 6570583
Alignment:
Q  18 taggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    ||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||    
T  6570638 taggttccttcgcgacatccctcaaaattttatccccgaggcacaagacaatgaca 6570583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 6594052 - 6594102
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  6594052 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 6594102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 18391690 - 18391740
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  18391690 ggttccttcgcgacatccctcaaaactttatccccgaggcacaagacaatg 18391740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 27097104 - 27097048
Alignment:
Q  351 attttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagcta 408  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||    
T  27097104 attttcgacaa-ccaaatttgtttggggtagctcaatatttattatttggggtagcta 27097048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 27181199 - 27181255
Alignment:
Q  351 attttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagcta 408  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||||    
T  27181199 attttcgacaa-ccaaatttgtttggggtagctcaatatttattatttggggtagcta 27181255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 47675653 - 47675706
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||| ||||||    
T  47675653 gtaggttcctttgcgacatccctcaaaactttgtcaccgaggcacaatacaatg 47675706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 25592276 - 25592197
Alignment:
Q  138 tatttaaacaatttgggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaat 217  Q
    |||||||| || ||||  |||| || ||| |||||| ||||||||||||||| ||||||||||  |||||||||| ||||    
T  25592276 tatttaaaaaagttggataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataat 25592197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 29716057 - 29716091
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagc 406  Q
    ||||||||||||||||||||||||||||| |||||    
T  29716057 tttggggtagctcaatatttattatttggggtagc 29716091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 40253508 - 40253669
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaat-aaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactca 176  Q
    |||||||||| ||||||||||||| | ||||| ||||||  |||| ||||||||||| || |||||||| || ||||||  ||| | |||||| || | |    
T  40253508 tttttacttacatgaaatgtaaataaaagcaataacaaagaaaataaaaattgacaataactatttaaaaaagttgggctcaacatgttttaaaaagtta 40253607  T
Q  177 attttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
    ||||| | || |||||| |   || |||||||| || |||||  ||||||||||||||||||    
T  40253608 attttcttcagaattgattgcatactaaatagactaataatgtctttttcaatgtaaacaaa 40253669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 40253839 - 40253912
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    ||||||||||| |||||||  |||||  || |||||||||||||||| ||||||| ||||||||  |||||||||    
T  40253839 tcttatttatgttaatttttaacaaataaa-tttatttggggtagctaaatattttttatttgggatagctaaat 40253912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 45855683 - 45855602
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgact-atttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||| | |  ||||||||| |||||| |||||| ||||||||||||||||    
T  45855683 caaaacatgttttaagaagtcaattttatccataattaattgttttaataaa-agattactaatgtcttttcaatgtaaacaa 45855602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 80 - 310
Target Start/End: Complemental strand, 20568 - 20332
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaatt 179  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  20568 ttttacttatacgaagtgtaaatcatagcaacaacaaataaaataaaattgacaaaaatatttaaaaaatttgggcaaaacgtattttaagaagtcaatt 20469  T
Q  180 ttatcc----ataattgactatttaataaatagattattaatgtttttcaatgtaaacaaactagttattttcaaaaacttatcttccttt--taatttg 273  Q
    ||||||    |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||  |||||||    
T  20468 ttatccatatataattgactgtttaataaataaattattaatgttttttaatgtaaacaaacaagttattttcaaaaacttattgtccttttataatttg 20369  T
Q  274 tttataattattgttggtgaaatattgtctacctata 310  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  20368 tttataactattgttgttgaaatattgtctacctata 20332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 20284 - 20155
Alignment:
Q  313 tgtcaatcatgtagcaattttttatcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatg 412  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20284 tgtcaatcatgtagcatttttttttcttatttatgctaattttcgacaaaccaaatttatttggggtagctcaatatttattatttggagtagctaaatg 20185  T
Q  413 taattttataccaaccaattcaagaataat 442  Q
    ||||||||||||||||||||||| ||||||    
T  20184 taattttataccaaccaattcaaaaataat 20155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 80 - 1
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaa 159  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  80 ttttacttatacgaagtgtaaatcatagcaacaacaaataaaataaaattgacaaaaatatttaaaaaatttgggcaaaa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 6016704 - 6016863
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||||||| | |||||||||||| || | ||||||||||| |  |||||||| || ||||| |||| | |||| || ||  |||    
T  6016704 tttttacttatatgaaatgtaaattaaagcaacaacaaaggata-aaaattgacaatagctatttaaaaaagttgggtaaaatgcatttcaataagccaa 6016802  T
Q  178 ttttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
    |||||||||||||||||  |||| ||||||||||| |||||  ||||||||||||||||||    
T  6016803 ttttatccataattgaccgtttactaaatagattaataatgtctttttcaatgtaaacaaa 6016863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 16608573 - 16608675
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| |||||||||  || | || ||| ||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||| |    
T  16608573 tcttatttatgttaattttcggtaaccaaacttt-tttggggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaattcatg 16608671  T
Q  437 aata 440  Q
    ||||    
T  16608672 aata 16608675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12743444 - 12743497
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  12743444 gtaggttccttcacgacatccctcaaaactttgtcaccgaggcacacgacaatg 12743497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 22786231 - 22786072
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    ||||||||||||| |||||||||| | |||||||||||| || | | |||| |||| |  |||||||| || ||||| |||| | |||| |||||  |||    
T  22786231 tttttacttatatcaaatgtaaattaaagcaacaacaaaggata-agaattaacaatagctatttaaaaaagttgggtaaaatgcatttcaagaagccaa 22786133  T
Q  178 ttttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
    ||||||||||||| |||  |||| ||||||||||| |||||  |||| |||||||||||||    
T  22786132 ttttatccataatcgaccgtttactaaatagattaataatgtcttttccaatgtaaacaaa 22786072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 21790978 - 21790838
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||||||||||||||||| | |||||||||||| || | ||| ||  |  |  |||||| | || ||||| |||| | |||||||||| |||||    
T  21790978 tttttacttatatgaaatgtaaattaaagcaacaacaaaggataaaaatttaccgtaggtatttagaaaagttgggtaaaatgcattttaagaagtcaat 21790879  T
Q  179 tttatccataattgactatttaataaatagattattaatgt 219  Q
    ||| ||||||||||| | |||| ||| ||||||| ||||||    
T  21790878 tttgtccataattgattgtttactaactagattaataatgt 21790838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 2407359 - 2407199
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    ||||||||||||| |||||||||| | |||||||||||| || | | |||| |||| |  |||||||| || ||| | |||| | |||| ||||| ||||    
T  2407359 tttttacttatatcaaatgtaaattaaagcaacaacaaaggata-agaattaacaatagctatttaaaaaagttgagtaaaatgcatttcaagaagtcaa 2407261  T
Q  178 ttttatccataattgactatttaataaatagattattaatg---tttttcaatgtaaacaaa 236  Q
    ||||||| |||||||||  |||| ||||||||||| |||||   |||| |||||||||||||    
T  2407260 ttttatcaataattgaccgtttactaaatagattaataatgtctttttccaatgtaaacaaa 2407199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 2407135 - 2407061
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    |||| ||||||||||||||| |||||||||||| |||||| ||  ||| |||||||||||||||| |||| ||||    
T  2407135 tttagttggggtagctcaatgtttattatttggggtagctgaaaataaatttataccaaccaattaaagattaat 2407061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5136741 - 5136691
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  5136741 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 5136691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5872464 - 5872414
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  5872464 ggttccttcgcgacctccctcaaaactttgtcaccgaggcacaagacaatg 5872414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 442
Target Start/End: Original strand, 6016931 - 6017001
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    |||||||||||||||| |||||||||||| ||||| |||  ||| |||||||||||||||| |||| ||||    
T  6016931 tttggggtagctcaatgtttattatttggggtagccaaaaataaatttataccaaccaattaaagattaat 6017001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7123357 - 7123307
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  7123357 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 7123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 438
Target Start/End: Original strand, 8762824 - 8762924
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| |||||||  |||||  || |||||||||||||||| ||||||| |||||||| |||||||||| |||   |||||||||  |||||||    
T  8762824 tcttatttatgttaatttttaacaaataaa-tttatttggggtagctaaatattttttatttggggtagctaaatataaaaatataccaacatattcaag 8762922  T
Q  437 aa 438  Q
    ||    
T  8762923 aa 8762924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 52094878 - 52094934
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    ||||||||||||  || ||||||||||||||| ||||||| ||||||||||||||||    
T  52094878 gtaggttccttcgtgaaatccctcaaaactttgtcaccgaagcacaagacaatgaca 52094934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 17815906 - 17816005
Alignment:
Q  138 tatttaaacaatttgggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatg-tttttcaatgtaaacaaa 236  Q
    |||||||| || |||||||||| |  ||| ||||| ||||||||||||||| |||| | ||||  |||||||||| ||||| ||||| ||||||||||||    
T  17815906 tatttaaaaaagttgggcaaaatgcgtttaaagaagtcaattttatccatagttgattgtttacaaaatagattaataatgtttttttaatgtaaacaaa 17816005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 22786004 - 22785934
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    |||||||||||||||| |||||||||||| |||||  ||  ||| |||||||||||||||| |||| ||||    
T  22786004 tttggggtagctcaatgtttattatttggggtagccgaaaataaatttataccaaccaattaaagattaat 22785934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 54165834 - 54165947
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    |||||||||| ||||||||||||| | ||||| |||||| || | ||||||||||| | |  ||| | || |||| ||||| |||||| ||||| |||||    
T  54165834 tttttacttaaatgaaatgtaaattaaagcaataacaaaggata-aaaattgacaatagttattagaaaagttggacaaaatgtatttcaagaaatcaat 54165932  T
Q  179 tttatccataattga 193  Q
    ||| |||||||||||    
T  54165933 tttttccataattga 54165947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 16608366 - 16608446
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||| | | ||||||||| || ||| |||||| ||||||||||||||||    
T  16608366 caaaacatgttttaagaagtcaattttatccataattcattgtttaataaa-aggttactaatgtcttttcaatgtaaacaa 16608446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 3578256 - 3578306
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||||| ||||| ||||||||||| || | ||||||||||||||||    
T  3578256 ggttccttcactacatctctcaaaactttatctctgaggcacaagacaatg 3578306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 5350555 - 5350501
Alignment:
Q  15 cagtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaat 69  Q
    ||||||||||| ||  |||||| ||||||||||| || |||||||||||||||||    
T  5350555 cagtaggttccatcctgacatctctcaaaactttatccccgaggcacaagacaat 5350501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 8394067 - 8394018
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||| ||| || ||||||||||||||||||    
T  8394067 ggttccttcgcgacatccctcaaaa-tttatccccgaggcacaagacaatg 8394018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 42318860 - 42319001
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaat-aaaattgacaaaaa--ta-tttaaacaatttgggcaaaacgtattttaagaactc 175  Q
    ||||| |||||||||||||||||   || ||||||||| ||||| ||||||||||| ||  || |||||| || ||| || ||||| ||||||| || ||    
T  42318860 ttttatttatatgaaatgtaaattgaagtaacaacaaaggaaataaaaattgacaataagttattttaaaaaaattgagctaaacgcattttaaaaagtc 42318959  T
Q  176 aattttatccataattgactatttaataaatagattattaat 217  Q
    | ||||||||||||||   | |||| ||||||||||| ||||    
T  42318960 acttttatccataattttatgtttactaaatagattaataat 42319001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 48861863 - 48861790
Alignment:
Q  369 ttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    ||||||||||||||| ||| |||||||||||| |||||  ||| ||| | |||||| |  ||||||||||||||    
T  48861863 ttatttggggtagcttaatgtttattatttggggtagccgaatataaatatataccgattaattcaagaataat 48861790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4588604 - 4588556
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaaga 65  Q
    |||| |||||||||||||||| |||||||||| ||||| |||| |||||    
T  4588604 gtagattccttcacgacatccttcaaaactttgtcaccaaggcccaaga 4588556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 5207183 - 5207231
Alignment:
Q  21 gttccttcacgacatccctcaaaactttttcaccgaggcacaagacaat 69  Q
    |||||||||| ||||||||||| ||||| || ||||||||||| |||||    
T  5207183 gttccttcacaacatccctcaacactttatccccgaggcacaatacaat 5207231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 5808560 - 5808712
Alignment:
Q  86 ttatatgaaatgtaaatcatagcaacaacaaatgaaat-aaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaattttat 183  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||| |||| || ||| || ||||||||||| | |||||||||  | |||||||    
T  5808560 ttatatgaaatgtaaattcaagcaacaacaaatgaaataaaaattgacaacaaatgttaaaaaaagttgggcaaaacatgttttaagaagccgattttat 5808659  T
Q  184 ccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
     ||||||||| | || |||||| ||||| ||||||| |||||||||| |||||    
T  5808660 tcataattgattgttaaataaaaagattgttaatgtcttttcaatgttaacaa 5808712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 1233751 - 1233853
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| ||||||||| ||| ||||  ||  |||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||| |    
T  1233751 tcttatttatgttaattttcggcaa-ccaaacttgcttggggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaattcatg 1233849  T
Q  437 aata 440  Q
    ||||    
T  1233850 aata 1233853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 12491770 - 12491626
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||||||| | |||| ||||||| ||  |||||||||||| |  |||||||| || ||| | |||| | |||| |||||  |||    
T  12491770 tttttacttatatgaaatgtaaattaaagcatcaacaaaggat-taaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaa 12491672  T
Q  178 ttttatccataattgactatttaataaatagattattaatgttttt 223  Q
    || ||||||||||||||  |||| ||||||||||| ||||||||||    
T  12491671 ttgtatccataattgaccgtttactaaatagattaataatgttttt 12491626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 13641107 - 13641203
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattca 434  Q
    ||||||||||| ||||||||| ||| ||||  ||  |||||||||||||||||||||||||||  |||||||||| ||| | ||||||||||||||||    
T  13641107 tcttatttatgttaattttcggcaa-ccaaacttgcttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaaccaattca 13641203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 13741519 - 13741615
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattca 434  Q
    ||||||||||| ||||||||| ||| ||||  ||  |||||||||||||||||||||||||||  |||||||||| ||| | ||||||||||||||||    
T  13741519 tcttatttatgttaattttcggcaa-ccaaacttgcttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaaccaattca 13741615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 4732310 - 4732254
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  4732310 gtaggttccttcgcgacatccctcaaaactttgtcaccgaggcacatgacaatgaca 4732254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5591534 - 5591484
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  5591534 ggttccttcgcgacatccctcaaaactttatcaccgaggcacaagacaatg 5591484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 1233544 - 1233624
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  1233544 caaaacatgttttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 1233624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 5808853 - 5808909
Alignment:
Q  351 attttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagcta 408  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  5808853 attttcgacaa-ccaaatttatttggggtagctcaatatttattatttggggtagcta 5808909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 13640900 - 13640980
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  13640900 caaaacatgttttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 13640980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 13741312 - 13741392
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  13741312 caaaacatgttttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 13741392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 32178122 - 32178225
Alignment:
Q  83 tacttatatgaaatgtaaatcatag---caacaacaaatgaaat-aaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||| | ||   |||||||||||||||| ||||||||||| ||||||||||| |  ||||| ||||||| ||||||||| ||||    
T  32178122 tacttatatgaaatgtaaattaaagcaacaacaacaaatgaaataaaaattgacaacaaatatttaaaaatgttgggaaaaacgtgttttaagaagtcaa 32178221  T
Q  178 tttt 181  Q
    ||||    
T  32178222 tttt 32178225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 18882034 - 18881902
Alignment:
Q  105 tagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaattttatccataattgactatttaata 203  Q
    ||||| |||||||||| | ||||||||||| || |||||| | ||||||| ||||| | |||| |||||  ||||||||||||||||||| | ||||  |    
T  18882034 tagcagcaacaaatgata-aaaattgacaataactatttagaaaatttggacaaaatg-atttcaagaaggcaattttatccataattgattgtttacaa 18881937  T
Q  204 aatagattattaatgttttt--caatgtaaacaaa 236  Q
    ||||||||| ||||||||||  |||||||||||||    
T  18881936 aatagattaataatgttttttccaatgtaaacaaa 18881902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 34256025 - 34256075
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  34256025 ggttccttcgcgacatccctcaaaactttgtccccgaggcacaagacaatg 34256075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 25337924 - 25337994
Alignment:
Q  162 tattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaa 232  Q
    ||||||||||| |||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| ||||    
T  25337924 tattttaagaagtcaattttatccataattgattgtttaataaa-agattactaatgtcttttcaatataaa 25337994  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 41570290 - 41570224
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaa 438  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||| |  ||||| ||||| |||||||    
T  41570290 tttggggtagctcaatatttattatttggggtagctgaatataaatacatacctaccaactcaagaa 41570224  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 18881422 - 18881323
Alignment:
Q  315 tcaatcatgtagcaatttttta----tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaa 410  Q
    |||||||||||| |||| ||||    |||||| |||||||||||||  ||| ||||  ||||||| ||||| ||||| |||||||||||| |||||||||    
T  18881422 tcaatcatgtagtaattgtttaactttcttatctatgctaattttcagcaa-ccaaacttatttgaggtagttcaatgtttattatttggtgtagctaaa 18881324  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 32415772 - 32415698
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaataat 442  Q
    ||||||||||||| |||||| ||||||||||   || || | || ||| |||||||||||||||| |||||||||    
T  32415772 tttatttggggtaactcaatgtttattatttaaggttgccagatataagtttataccaaccaattgaagaataat 32415698  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 31577855 - 31577908
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatgaca 73  Q
    ||||||||| | || || ||||||||||| || |||||||||||||||||||||    
T  31577855 ggttccttcgctacctctctcaaaactttatccccgaggcacaagacaatgaca 31577908  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 43115074 - 43115042
Alignment:
Q  372 tttggggtagctcaatatttattatttggagta 404  Q
    |||| ||||||||||||||||||||||||||||    
T  43115074 tttgaggtagctcaatatttattatttggagta 43115042  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 16546558 - 16546418
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    |||||||||||||||||||||||| | |||| ||||||| || | ||||||||||| |  |||||||| || ||| | |||| | |||| |||||  |||    
T  16546558 tttttacttatatgaaatgtaaattaaagcatcaacaaaggata-aaaattgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaa 16546460  T
Q  178 ttttatccataattgactatttaataaatagattattaatgt 219  Q
    |||||||||||||||||  |||| ||||||||||| ||||||    
T  16546459 ttttatccataattgaccgtttactaaatagattaataatgt 16546418  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 42799050 - 42799209
Alignment:
Q  80 ttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactcaat 178  Q
    ||||||||||||||||||||||  | || |||||||||||| | ||||||||||| |  |||||||| || ||||  |||| | |||| |||||  ||||    
T  42799050 ttttacttatatgaaatgtaaactaaagtaacaacaaatgata-aaaattgacaatagctatttaaaaaagttggataaaatgcatttcaagaagccaat 42799148  T
Q  179 tttatccataattga-ctatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
    ||||||||||||||| |  |||| ||||||||||| |||||  |||| |||||||||||||    
T  42799149 tttatccataattgatcattttactaaatagattaataatgtcttttccaatgtaaacaaa 42799209  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 45655840 - 45655999
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaataaaattgacaaaaa-tatttaaacaatttgggcaaaacgtattttaagaactcaa 177  Q
    ||||||||||||| |||||||||| | |||||||||||| || | | |||| |||| |  |||||||| || ||||| |||| | |||| || ||  |||    
T  45655840 tttttacttatatcaaatgtaaattaaagcaacaacaaaggata-agaattaacaatagctatttaaaaaagttgggtaaaatgcatttcaaaaagccaa 45655938  T
Q  178 ttttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaa 236  Q
    |||||| ||||||||||  |||| ||||||||||| |||||  ||||||||||||||||||    
T  45655939 ttttattcataattgaccgtttactaaatagattaataatgtctttttcaatgtaaacaaa 45655999  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 42019394 - 42019446
Alignment:
Q  17 gtaggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaat 69  Q
    |||||||||||| ||||||||||||||||||| || | |||||||||||||||    
T  42019394 gtaggttccttcgcgacatccctcaaaactttatcccagaggcacaagacaat 42019446  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 45656067 - 45656127
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaatt 432  Q
    ||||||||||||||||||||||||||||| |||||  ||  ||| ||||||||||||||||    
T  45656067 tttggggtagctcaatatttattatttggggtagccgaaaataaatttataccaaccaatt 45656127  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 35524572 - 35524750
Alignment:
Q  79 tttttacttatatgaaatgtaaatcatagcaacaacaaatgaaat-aaaattgacaa-aaatatttaaacaatttgggcaaaacgtattttaagaactca 176  Q
    |||||||||| ||||||||||||| | ||||| ||||||  |||| ||||||||||| || |||||||| || ||||||  ||| | |||||| || | |    
T  35524572 tttttacttacatgaaatgtaaataaaagcaataacaaagaaaataaaaattgacaataactatttaaaaaagttgggctcaacatgttttaaaaagtta 35524671  T
Q  177 attttatccataattgactatttaataaatagattattaatg--tttttcaatgtaaacaaactagttattttcaaaaa 253  Q
    ||||| | || |||||| |   || |||||||| || |||||  ||||||||||||||||||  |||||||| ||||||    
T  35524672 attttcttcagaattgattgcatactaaatagactaataatgtctttttcaatgtaaacaaataagttatttgcaaaaa 35524750  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 35524908 - 35524981
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaat 411  Q
    ||||||||||| |||||||  |||||  || |||||||||||||||| ||||||| |||||||| ||||||||||    
T  35524908 tcttatttatgttaatttttaacaaataaa-tttatttggggtagctaaatattttttatttggggtagctaaat 35524981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 4435405 - 4435337
Alignment:
Q  150 ttgggcaaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt 219  Q
    |||||||||| | |||| ||||||||||||| ||||||||||| || |||||| ||||||||| ||||||    
T  4435405 ttgggcaaaatgcatttcaagaactcaatttcatccataattgtctgtttaat-aatagattaataatgt 4435337  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 442
Target Start/End: Original strand, 8230371 - 8230475
Alignment:
Q  337 tcttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaag 436  Q
    ||||||||||| |||||||  |||||  || ||| |||||||||||| ||||||| |||||||| |||||||||| |||    ||||||||  |||||||    
T  8230371 tcttatttatgttaatttttaacaaataaa-tttgtttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaag 8230469  T
Q  437 aataat 442  Q
    ||||||    
T  8230470 aataat 8230475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 26180532 - 26180469
Alignment:
Q  372 tttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaa 435  Q
    |||| ||||||||||||||||||||||| |||||||| || ||| |  |||||||| |||||||    
T  26180532 tttgaggtagctcaatatttattatttgaagtagctagatataaatacataccaactaattcaa 26180469  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 39070184 - 39070228
Alignment:
Q  175 caattttatccataattgactatttaataaatagattattaatgt 219  Q
    ||||||||||||||||||||  |||| ||||||||||| ||||||    
T  39070184 caattttatccataattgaccgtttactaaatagattaataatgt 39070228  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 115252 - 115202
Alignment:
Q  20 ggttccttcacgacatccctcaaaactttttcaccgaggcacaagacaatg 70  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  115252 ggttccttcgcgacatcgctcaaaactttgtcaccgaggcacaagacaatg 115202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 212157 - 212077
Alignment:
Q  155 caaaacgtattttaagaactcaattttatccataattgactatttaataaatagattattaatgt-ttttcaatgtaaacaa 235  Q
    |||||| | ||||||||| |||||||||| ||||||||| | ||||||||| |||||| |||||| ||||||||||||||||    
T  212157 caaaacatgttttaagaagtcaattttattcataattgattgtttaataaa-agattactaatgtcttttcaatgtaaacaa 212077  T

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Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 7059 - 6958
Alignment:
Q  339 ttatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttggagtagctaaatgtaattttataccaaccaattcaagaa 438  Q
    ||||||||||||||||||||||| | || ||| |||||| |||||||||||||||||||| |  ||||   || ||| |||||||||| ||||| |||||    
T  7059 ttatttatgctaattttcgacaa-ctaaatttgtttggg-tagctcaatatttattatttaggttagccggatataaatttataccaaacaattgaagaa 6962  T
Q  439 taat 442  Q
    ||||    
T  6961 taat 6958  T

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Target: scaffold1709 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 1355 - 1317
Alignment:
Q  368 tttatttggggtagctcaatatttattatttggagtagc 406  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1355 tttatttggggtagttcaatatttattatttggagtagc 1317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 399
Target Start/End: Complemental strand, 6613 - 6529
Alignment:
Q  315 tcaatcatgtagcaattttttatct--tatttatgctaattttcgacaaaccaagtttatttggggtagctcaatatttattatttg 399  Q
    |||||| ||||| |||||||||| |  |||||||||||||||| |   ||| || ||| ||||| ||||||||||||||||||||||    
T  6613 tcaatcttgtagtaattttttatttattatttatgctaatttttgc--aacgaaatttgtttggagtagctcaatatttattatttg 6529  T

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