View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2315_low_3 (Length: 430)
Name: NF2315_low_3
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2315_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 14075731 - 14075506
Alignment:
| Q |
17 |
agtattaaacatcataattcagacaaaataatgagaaaattttacacaagataagtaaaaagaatgacaaacagttttattctatgaattaatggatgta |
116 |
Q |
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| T |
14075731 |
agtattaaacatcataattcagacaaaataatgagaaaatttgacacaagataagtaaaaagaatgacaaacagttttattctatgaattaatggatgta |
14075632 |
T |
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| Q |
117 |
caatgaaatgaaatcatcatcacggtcatctacatacacatgtgaacaccaaaacaatgaatcacaaaataaatcatcatcagatcgatcccgtccgtcg |
216 |
Q |
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| T |
14075631 |
caatgaaatgaaatcatcatcacggtcatctacatacacgtgtgaacaccaaaacaatgaatcacaaaataaatcatcatcagatcgatcccgtccgtcg |
14075532 |
T |
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| Q |
217 |
aatcaacaaacacatcaacgacaagt |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14075531 |
aatcaacaaacacatcaacgacaagt |
14075506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 320 - 430
Target Start/End: Complemental strand, 14075425 - 14075315
Alignment:
| Q |
320 |
cgatcccatccgcccgtcaaagaaaagtaagatcaacggccaaaaagcctccacgtggaaaaaccctagaaagcaatggcgaagatagcagcagagagag |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14075425 |
cgatcccatccgcccgtcaaagaaaagtaagatcaacggccaaagagcctccacgtggaaaaaccctagaaagcaatggcgaagatagcagcagagagag |
14075326 |
T |
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| Q |
420 |
cagttgctgcc |
430 |
Q |
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| T |
14075325 |
cagttgctgcc |
14075315 |
T |
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