View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2315_low_4 (Length: 402)
Name: NF2315_low_4
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2315_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 36763856 - 36763584
Alignment:
| Q |
15 |
aaaataaatagtggcctgaacagaatccaggttgaaccaaagaaaaacacaactattactaaccactatgaattagcacaaccactactaagcgcgtgtt |
114 |
Q |
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| T |
36763856 |
aaaataaatagtggcctgaacagaattcaggttgaaccaaagaaaaacacaattattactaaccactatgaattagcacagccactactaagcacgtgtt |
36763757 |
T |
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| Q |
115 |
cggaaacttataaagtcacggtgtcaccgtgccattactgaagctgaaatatgttgcttcagtaaagtcacgttcaaagtgcataggaacatgagaaatg |
214 |
Q |
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| T |
36763756 |
cggaaacttataaagtcacggtgtcaccgtgccattactgaagctgaaatttgttgcttcagtaaagtcacgttcaaagtgcataggaacatgagaaatg |
36763657 |
T |
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| Q |
215 |
tcaacgcggcacacaaccaaatatgatttaattttttgttttatacaattttagatgatatcaacattttgtt |
287 |
Q |
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| T |
36763656 |
tcaacgcggcacacaaccaaatatgatttaattttttgttttatacaattttagatgatatcaacattttgtt |
36763584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 36763545 - 36763488
Alignment:
| Q |
326 |
ttaccacagcaccagtgtccatgtgactaacatcagctgtgacaccaggggtgttgac |
383 |
Q |
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| T |
36763545 |
ttaccacagcaccagtgtccatgtgactaacatcagctgtgacaccaggggtgttgac |
36763488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 35038203 - 35038240
Alignment:
| Q |
166 |
tgttgcttcagtaaagtcacgttcaaagtgcataggaa |
203 |
Q |
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| T |
35038203 |
tgttgcttcagttaagtcacgttcaaagtgcataggaa |
35038240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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