View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2315_low_6 (Length: 319)
Name: NF2315_low_6
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2315_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 302
Target Start/End: Original strand, 5770979 - 5771260
Alignment:
| Q |
24 |
acatttacatttacatgcactcaatgtctacaaccatatgtcaccattgcaccttacgtgtctatacgtggcttaattatagagagaaaagctcttcata |
123 |
Q |
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| T |
5770979 |
acatttacatttacatgcactcaatgtctacaaccatatgtcaccattgcaccttacgtgtctatacgtggcttaattatagagagaaaagctcttcata |
5771078 |
T |
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| Q |
124 |
aattggagtgtacatatattattaatttactaacaattatagcagtaggttttgtcaattatattgatgcacaaaaacaaagcaaaaagacacagtatca |
223 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5771079 |
aattggagtgtacatatattatt-attccctaacaattatagcagtaggttttgtcaattatattgatgcacaaaaacaaagcaaaaag--acagtatca |
5771175 |
T |
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| Q |
224 |
c----aattataaggaaaatttatatcaagagcgctattcgttgtgctttcgtgaatta--ttattcgctacatatagcattttt |
302 |
Q |
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| T |
5771176 |
cttataattataaggaaaatttatatcaagagcgctattcgttgtgctttcgtgaattattttattcgctacatatagcattttt |
5771260 |
T |
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