View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2315_low_7 (Length: 295)
Name: NF2315_low_7
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2315_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 295
Target Start/End: Complemental strand, 9871149 - 9870920
Alignment:
| Q |
61 |
tcacttgtcaaagcttcttagacttgaactcttttttctaaaggaaaattatttttggtatgccgataactcttgtgctgtatcaatttttccctttaaa |
160 |
Q |
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| T |
9871149 |
tcacttgtcaaagcttcttagacttgaactcttttctttaatt-----tttttttttctataccgataactcttgtgctgtatcaatttttccctttaaa |
9871055 |
T |
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| Q |
161 |
ctattgacgatgacatatatatttgaccttggagttattgtttatacttataatgttttttaaaacattatataactaaataaaaaccatgtaggtcgaa |
260 |
Q |
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| T |
9871054 |
ctattgacgatgacatataaatttgaccttggaattattgtttatacttataatgttttttaaaacattatataactaaataaaaaccatgtaggtcgaa |
9870955 |
T |
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| Q |
261 |
attgaaatcgacatatctaaaagtatatagtagga |
295 |
Q |
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| T |
9870954 |
attgaaatcgacatgtctaaaagaatatagtagga |
9870920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 112 - 295
Target Start/End: Complemental strand, 9876642 - 9876459
Alignment:
| Q |
112 |
tttttggtatgccgataactcttgtgctgtatcaatttttccctttaaactattgacgatgacatatatatttgaccttggagttattgtttatacttat |
211 |
Q |
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||||||||||| |||||||||||||| | |||||| |||||||||||||||| || | |||| |||||||||||||||||| |||| ||||| | || |
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| T |
9876642 |
tttttggtatgtcgataactcttgtgatatatcaacgtttccctttaaactatagaaggtgacgtatatatttgaccttggaagtattctttatccaaat |
9876543 |
T |
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| Q |
212 |
aatgttttttaaaacattatataactaaataaaaaccatgtaggtcgaaattgaaatcgacatatctaaaagtatatagtagga |
295 |
Q |
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| T |
9876542 |
aatgttttttaaaacattatataagtagataaaatccatgtaggtccatattgaaatggacatgtctaaaagattatagtagga |
9876459 |
T |
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