View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2316_high_11 (Length: 215)
Name: NF2316_high_11
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 2272545 - 2272331
Alignment:
| Q |
1 |
tcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaacc |
100 |
Q |
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| T |
2272545 |
tcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaacc |
2272446 |
T |
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| Q |
101 |
agagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgta |
200 |
Q |
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| T |
2272445 |
agagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgta |
2272346 |
T |
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| Q |
201 |
gtacaatttgataaa |
215 |
Q |
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||||||||||||||| |
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| T |
2272345 |
gtacaatttgataaa |
2272331 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 46353947 - 46353872
Alignment:
| Q |
90 |
atagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaag |
166 |
Q |
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||||||||||| || || || |||| ||||||||| |||||||| ||||||| ||||||||||||||||| |||||| |
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| T |
46353947 |
atagccaaacctgaaaaatcacaatcccaatcctt-ctgattatgcacttgataatacatattaaatgcataagaag |
46353872 |
T |
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