View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2316_high_2 (Length: 418)
Name: NF2316_high_2
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 10516404 - 10516801
Alignment:
| Q |
16 |
atctctcaaggtccactaannnnnnnaatattttattaaaattgaagcattaaatgaatttaatggctgattgatgttattatagtcaagaaaaagaaaa |
115 |
Q |
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| T |
10516404 |
atctctcaaggtccactaatttttttaatattttattaaaattgaagcattaaatgaatttaatggttgattgatgttattatagtcgagaaaaagaaaa |
10516503 |
T |
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| Q |
116 |
ggtggcttgatgttaccataaaagcttaacatatatatccattagcatgttacgtggcagctggtaaacactttgttgccacctatgcaacatgcactgt |
215 |
Q |
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| T |
10516504 |
ggtggcttgatgttaccttaaaagcttaacatatatatccattagcatgttacgtggcagctggtaaacactttgttgccacctatgcaacatgcactgt |
10516603 |
T |
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| Q |
216 |
cttcaaaactcacatcaacagttcaacactaccagtttcctttgatttcacaggcacttcctccttcacttctttgtctctctctctgcacttctctgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10516604 |
cttcaaaactcacatcaacagttcaacactaccagtttcctttgatttcacaggcacttcctccttcacttctttgtctctctctctgcacttctctgtt |
10516703 |
T |
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| Q |
316 |
caactataccccatttccatgcagtgcaatgtaagtgtacctttcttacttcaaacccaaatttacttttctcataatttggactgttcattgttcat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10516704 |
caactataccccatttccatgcagtgcaatgtaagtgtacctttcttacttcaaacccaaatttacttttctcataatttgaactgttcattgttcat |
10516801 |
T |
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