View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2316_high_5 (Length: 311)
Name: NF2316_high_5
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 41062107 - 41062391
Alignment:
| Q |
17 |
acaaactgtcagcattgtgcctacttctgcaataagtggtgaaggactctcagatatcaaatcagaattgattaagtggacccagaaaactatgcttaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062107 |
acaaactgtcagcattgtgcctacttctgcaataagtggcgaaggactctcagatatcaaatcagaattgattaagtggacccagaaaactatgcttaat |
41062206 |
T |
|
| Q |
117 |
caacttacatacacggatcagttgcaggttacctattatttattagtaattatcattccatgttaaaccattaccttattcttatttgtttgtattgtgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062207 |
caacttacatacacggatcagttgcaggttacctattatttattagtaattatcattccatgttaaaccattaccttattcttatttgtttgtattgtgc |
41062306 |
T |
|
| Q |
217 |
ctgctagtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41062307 |
ctgctagtgtactgttttggatgtcaagctccttcaaggccatggaaccgctatcaatgttgttttagttaatggtgttcttcat |
41062391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 183259 - 183338
Alignment:
| Q |
222 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcat |
301 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
183259 |
agtgtactgttttggaagtcaaggttattgaaggctatggaactactattaatgttgttttagttaatggtgttcttcat |
183338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 301
Target Start/End: Complemental strand, 29219650 - 29219622
Alignment:
| Q |
273 |
atgttgttttagttaatggtgttcttcat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29219650 |
atgttgttttagttaatggtgttcttcat |
29219622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 44628104 - 44628183
Alignment:
| Q |
222 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcat |
301 |
Q |
| |
|
||||||| |||||||| |||||| | || ||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
44628104 |
agtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcat |
44628183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 44606620 - 44606699
Alignment:
| Q |
222 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgttatcaatgttgttttagttaatggtgttcttcat |
301 |
Q |
| |
|
||||||| |||||||| |||||| | | ||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
44606620 |
agtgtaccgttttggaagtcaaggttatcgaaggccatggaactactattgatgttgttttagttaatggtgttcttcat |
44606699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University