View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2316_low_1 (Length: 552)
Name: NF2316_low_1
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 262 - 537
Target Start/End: Complemental strand, 54031077 - 54030802
Alignment:
| Q |
262 |
ctcgtacaccttctcataattattgtgaaccaaaacatattttttagatttattaaacaacagatgtatctaatccgcattattaaccaaatacataaat |
361 |
Q |
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| T |
54031077 |
ctcgtacaccttttgataattattataaaccaaaacatattttttagatttattaaacaacagatgtatctaatccgcattattaaccaaatacatgaat |
54030978 |
T |
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| Q |
362 |
tgttgattgaaatctaagatatatttttacgtaccacatgcatcttacaattagccagacaaggttttacgcggagattagttggtatca-atggaagga |
460 |
Q |
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| T |
54030977 |
tgttcattg-aatctaagatatattttttcgtaccacatgcatcttagaattagccagacaaggttttacgcggagattagttggtatcatgtggaagga |
54030879 |
T |
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| Q |
461 |
taaaattgacaacacactttgtacatatttgtctgtatataggtaaagagaagcttctagtgaagaaggaaaaaagt |
537 |
Q |
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| T |
54030878 |
taaaattgacaacacactttgtacatatttgtctgtatataggtaaagagaagcttctagtgaagaaggaaaaaagt |
54030802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 54031327 - 54031168
Alignment:
| Q |
12 |
atgaattatacgaccaacctctgaccatagaagcaaggtatgcatgctcgttaaaatataatcaaatgcttgtttttcatttgcatatttttattttctt |
111 |
Q |
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| T |
54031327 |
atgaattatacgaccaacctctgaccatagaagcaaggtatgcatgctcgttaaaatataatcaaatgcttgtttttcatttgcatatttttattttctt |
54031228 |
T |
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| Q |
112 |
tgtacaaatacaatggtggctataggctttaggagagaaaattctttgatactttagagt |
171 |
Q |
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| T |
54031227 |
tgtacaaatacaatggtggctataggctttaggagagagaattctttgatactttagagt |
54031168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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