View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2316_low_4 (Length: 345)
Name: NF2316_low_4
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_low_4 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 7425653 - 7425324
Alignment:
| Q |
1 |
ccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcgtaaataatctgtgatgttacagagacatgccctag |
100 |
Q |
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| T |
7425653 |
ccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcataaataatctgtgatgttacagagaaatgccctag |
7425554 |
T |
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| Q |
101 |
gacttaaagagctaggt-ttaaaaaggtccgccacaattttaatacaagagcctccaatcacctagttggcataaccaagaaagaacctgaaccaacaac |
199 |
Q |
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| T |
7425553 |
gacttaaagagctaggtgttaaaaaggtccgccacaattttaatacaagagcctccaatcacctagttggcataaccaagaaagaacctgaaccaacaac |
7425454 |
T |
|
| Q |
200 |
atcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaatcaagcgaaatcattttggttgggcaatgccaatcaatgttgtcaacaccagaagc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7425453 |
atcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaatcaagcaaaatcattttggttgggcaatgccaatcaatgttgtcaacacaagaagc |
7425354 |
T |
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| Q |
300 |
tacaatacataaataaatgggacagaaact |
329 |
Q |
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| T |
7425353 |
tacaatacataaataaatgggacataaact |
7425324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 11356823 - 11356927
Alignment:
| Q |
165 |
gttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacct-gaatcaagcgaaatcattttggt |
263 |
Q |
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|||| ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| ||| |||| ||||||||||||| |
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| T |
11356823 |
gttgacataaccaa-aaagaccctgaactaacaacactaggttcaagcaatacaaaacaccaaagaaataccacctaaaataaagcaaaatcattttggt |
11356921 |
T |
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| Q |
264 |
tgggca |
269 |
Q |
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||||| |
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| T |
11356922 |
ggggca |
11356927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 18081 - 18139
Alignment:
| Q |
4 |
cctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacaca |
62 |
Q |
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|||||||||||||||||| || || ||| ||||| | ||||||||||||||||||||| |
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| T |
18081 |
cctcagactatgaatcaaaaaactgccaaactgccgcaacttcggatatttcagacaca |
18139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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