View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2316_low_6 (Length: 271)
Name: NF2316_low_6
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_low_6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 5621732 - 5621989
Alignment:
| Q |
14 |
tactatatgaactactatttctgcagagatattacagtaattagaaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttgagtctgt |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621732 |
tactatatgaactactatttctgctgagatattacagtaattagcaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttgagtctgt |
5621831 |
T |
|
| Q |
114 |
tggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccattaagttgtaat |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5621832 |
tggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccattaagttgtaat |
5621931 |
T |
|
| Q |
214 |
agttattttttctgtagttgtcatactaacgacatctattatgctcataatatgcctt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5621932 |
agttattttttctgtagttgtcatactaacaacatctattatgctcataatatgcctt |
5621989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University