View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2316_low_9 (Length: 235)
Name: NF2316_low_9
Description: NF2316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2316_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 5622115 - 5622206
Alignment:
| Q |
4 |
gttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgt |
95 |
Q |
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| T |
5622115 |
gttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgt |
5622206 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 5638469 - 5638540
Alignment:
| Q |
150 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttat |
221 |
Q |
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| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttat |
5638540 |
T |
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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
88 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
129 |
Q |
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| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 30634683 - 30634587
Alignment:
| Q |
1 |
atcgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
97 |
Q |
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| T |
30634683 |
atcggtttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 30634501 - 30634465
Alignment:
| Q |
185 |
gtggttgtgtgctgcaggttgataagttagatcttat |
221 |
Q |
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| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttat |
30634465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21423469 - 21423373
Alignment:
| Q |
1 |
atcgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
97 |
Q |
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| T |
21423469 |
atcggtttcgtattttactggatgagagcaactcatttggcgtgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
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