View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_high_15 (Length: 241)
Name: NF2317_high_15
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 32813065 - 32813293
Alignment:
| Q |
8 |
agacttgaaaagggagctagttgtgataaaattaaagctgcaattaagtaagaataaaaaacttttgcttttaaggggcaaggatattttatgtttannn |
107 |
Q |
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| T |
32813065 |
agacttgaaaagggagctagttatgataaaactaaagctgcaattaagtaagaataaaaaacttttgcttgtaagggacaaagatattttatgttttttt |
32813164 |
T |
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| Q |
108 |
nnnn-cctataatttagttactatagtgaatgctaattttctcttgtctacacatttttcctaggcaagcatctgagggagatttgaagagaatcctcgg |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| || |
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| T |
32813165 |
tttttcctataatttagttactatagtgaatgctaatttcctcttgtctacacatttttcatagcaaagcatctgagggagatttgaagggaatccttgg |
32813264 |
T |
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| Q |
207 |
ttacacaggataatgttgtgtctactgat |
235 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
32813265 |
ttacacatgataatgttgtgtctactgat |
32813293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 7901006 - 7900772
Alignment:
| Q |
8 |
agacttgaaaagggagctagttgtgataaaattaaagctgcaattaagtaagaataaaaaacttttgcttttaaggggcaaggatattttatgtttannn |
107 |
Q |
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||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||| |
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| T |
7901006 |
agacttgaaaagggagcaagttatgatgaaattaaagctgcaattaagtaagaataaaaaacttttgcttttaagggacaagaatatatattgtttattt |
7900907 |
T |
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| Q |
108 |
nnnn-----cctataatttagttactatagtgaatgctaattttctcttgtctacacatttttcctaggcaagcatctgagggagatttgaagagaatcc |
202 |
Q |
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|||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
7900906 |
ttttttcttcctataatgtatttactatagtgaatgctaattttctattgtctacacatttttaataggcaagcatctgagggagatttgaagggaatcc |
7900807 |
T |
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| Q |
203 |
tcggttacac--aggataatgttgtgtctactgat |
235 |
Q |
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| T |
7900806 |
ttggttacacagaggatgatgttgtgtctactgat |
7900772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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