View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_high_5 (Length: 526)
Name: NF2317_high_5
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 7 - 512
Target Start/End: Original strand, 27079106 - 27079611
Alignment:
| Q |
7 |
ctgagaagaaaaagctcggtgatcgtctttccgctgttatagacgccgccaacgatcgtaaactacctcccgaacttcgcggccaacgcaacaatgttag |
106 |
Q |
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| T |
27079106 |
ctgataagaaaaagctcggtgatcgtctttccgctgttatagacgccgccaacgatcgtaaactacctcccgaacttcgcggccaacgcaacaatgttag |
27079205 |
T |
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| Q |
107 |
gtatacacacacatttgtctctcttacaaattagaatcacagttctacataatttgatggattcaatactcaattgtatgtcttttatgatagatatgag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27079206 |
gtatacacacacatttgtctctcttacaaattagaatcacagttctacataatttgatggattcaatactcaattgtatgtcttttatgatagatatgag |
27079305 |
T |
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| Q |
207 |
tccaattaaatatacgattatgattgattgacagtgtaaacaaactttacactgttaacgcatattgatagtagagcataattgaccttgcttttgatga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27079306 |
tccaattaaatatacgattatgattgattgacagtgtaaacaaactttacactgttaacgcatattgatagtagagcataattgaccttgcttttgatga |
27079405 |
T |
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| Q |
307 |
ctttgtgctgtttaacacaaattggcggtttgacaggtcagaaaccgacttgatcaatgtcgttgagcaaagaatatggcattcaatggaagaaggacaa |
406 |
Q |
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| T |
27079406 |
ctttgtgctgtttaacacaaattggcggtttgacaggtcagaaaccgacttgatcaatgtcgttgagcaaagaatatggcattcaatggaagaaggacaa |
27079505 |
T |
|
| Q |
407 |
tttgagaatttaccggggaaaggaaagccgcttaaacttgacacaaatcctcatgcagatccagctgaagacacattatacagaatcctttcgaaaaatg |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27079506 |
tttgagaatttaccggggaaaggaaagccgcttaaacttgacacaaatcctcatgcagatccagctgaagacaccttatacagaatcctttcgaaaaatg |
27079605 |
T |
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| Q |
507 |
gatgtg |
512 |
Q |
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|||||| |
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| T |
27079606 |
gatgtg |
27079611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 7601440 - 7601480
Alignment:
| Q |
220 |
acgattatgattgattgacagtgtaaacaaactttacactg |
260 |
Q |
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| T |
7601440 |
acgattatgattgattgacagtgtaaaaaatctttacactg |
7601480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 8961012 - 8960972
Alignment:
| Q |
220 |
acgattatgattgattgacagtgtaaacaaactttacactg |
260 |
Q |
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| T |
8961012 |
acgatcatgattgattgacagtgtaaaaaatctttacactg |
8960972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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