View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_high_6 (Length: 525)
Name: NF2317_high_6
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 514
Target Start/End: Original strand, 7261269 - 7261775
Alignment:
| Q |
17 |
actttttatatgtattgggattcttgtagcactggtggttgggctgcctctttcaggaaaccctttatggtattgagtcatttccccttaccgcttctgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7261269 |
actttttatatgtattgggattcttgtagcactggtggttgggctgcctctttcaggaaaccctttatggtattgagtcatttccccttaccacttctgt |
7261368 |
T |
|
| Q |
117 |
tgtcggcgtgagtgtgtttttcatttcatgtatcctatcctaacatttgtcatactaagttaatgtacaacaagaaacgataggatagttgcaactatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7261369 |
tgtcggcgtgagtgtgtttttcatttcatgtatcctatcctaacatttgtcatactaagttaatgtacaacaagaaacgataggatagttgcaactatag |
7261468 |
T |
|
| Q |
217 |
tacacgagagattgaaatattcaacatgcaatatgttgatctatagaaaacgatactaatccnnnnnnnnnncttcatcttatcaggtggcgaacaatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7261469 |
tacacgagagattgaaatattcaacatgcaatatgttgatgtatagaaaacgatactaatccttttttttttcttcatcttatcaggtggcgaacaatgt |
7261568 |
T |
|
| Q |
317 |
ttggcattgcagtggttccaacctttttattagatgtaggaatgataacttctccagaaagtccccgctggcttttccaggttttcctgcta--ctctgg |
414 |
Q |
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|||||||||||||||||||| || ||||||||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
7261569 |
ttggcattgcagtggttccatccattttattagctctaggaatggcaatttctccagaaagtccccgttggcttttccaggttttcctgctactctctgg |
7261668 |
T |
|
| Q |
415 |
tatcttttgttgtggaagcaataagttcacatcgac------gttaaaccattgg-nnnnnnngttacaataattagacaaattgatgacttttgtcgaa |
507 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
7261669 |
tatcttttgttgtggaagcaataggttcacatcgacgttaaagttaaaccattggaaaaaaaagttacaataattagacaaatcgatgacttttgtcgag |
7261768 |
T |
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| Q |
508 |
tattcat |
514 |
Q |
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||||||| |
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| T |
7261769 |
tattcat |
7261775 |
T |
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