View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_high_9 (Length: 415)
Name: NF2317_high_9
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 24 - 396
Target Start/End: Original strand, 17303381 - 17303750
Alignment:
| Q |
24 |
tacattatgtcacggcccaaatcgtgggcacatagcattatttaaaaccctaataatcacaacaatataagacaattcagcacaacaagaattaaacaaa |
123 |
Q |
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| T |
17303381 |
tacatcatatcacggcctaaatcgtgggcacatagctttatttaaaaccctaataatcacaacaatataagacaattcagcacaacaagaattaaacaaa |
17303480 |
T |
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| Q |
124 |
gggaaacatgaacatgataagaagnnnnnnnnnnnnnncaaacctgaaatgataatgaccaagaccatgtttaacgccccatttaaactctccaacatat |
223 |
Q |
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| T |
17303481 |
gggaaacatgaacatgaaaagaaaaagaaaagaaaa---aaacctgaaatgataatgaccaaggccatgtttaacaccccatttaaattctccaacatat |
17303577 |
T |
|
| Q |
224 |
ctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaa |
323 |
Q |
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| T |
17303578 |
ctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaa |
17303677 |
T |
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| Q |
324 |
acccatgtctcaatccttgtcgatattgccctctataacgacttccccttgcccatgtttccacaccataccc |
396 |
Q |
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| T |
17303678 |
acccatgtctcaatccttgtcgatattgccctctataacgacttccccttgcccatgtctccacaccataccc |
17303750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 173 - 339
Target Start/End: Original strand, 1586796 - 1586962
Alignment:
| Q |
173 |
tgataatgaccaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccat |
272 |
Q |
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| T |
1586796 |
tgatagtggccaagaccatgtttaacaccccacttaaactctccaacaaatctactcccatcatcacaagtatgaacaccactaccatgactctgtccat |
1586895 |
T |
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| Q |
273 |
tagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatcc |
339 |
Q |
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| T |
1586896 |
tcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatcc |
1586962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 343
Target Start/End: Original strand, 24238788 - 24238950
Alignment:
| Q |
181 |
accaagaccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccat |
280 |
Q |
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| T |
24238788 |
accaagaccatgtttagaaccaaacttaaattcaccaacataacaactcccatcagaacaagattgaacaccaaaaccatgactctgtccattaaaccat |
24238887 |
T |
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| Q |
281 |
tctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatccttgt |
343 |
Q |
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| T |
24238888 |
tccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgt |
24238950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 41090116 - 41090245
Alignment:
| Q |
188 |
ccatgtttaacgccccatttaaactctccaacatatctactcccatcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccag |
287 |
Q |
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||||||||||| ||||||||||| || |||||||| |||||||| | ||||||||||| || ||||||||| ||| |||||| ||||||| |||| |
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| T |
41090116 |
ccatgtttaacaccccatttaaattccccaacataatggctcccatcattgcaagtatgaactccaaacccatgacactgaccattacaccattcaccag |
41090215 |
T |
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| Q |
288 |
tataaacatccccagtataaaacctataaa |
317 |
Q |
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|||| ||||| ||| | |||||||||||| |
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| T |
41090216 |
tatagacatcaccaccaaaaaacctataaa |
41090245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 32693598 - 32693682
Alignment:
| Q |
257 |
ccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatgtctcaatcctt |
341 |
Q |
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|||||||| || |||||| ||||||| |||| | || ||| |||||||| ||||||||||||||| | |||||||||| ||||| |
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| T |
32693598 |
ccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcattcctt |
32693682 |
T |
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