View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2317_low_1 (Length: 909)

Name: NF2317_low_1
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2317_low_1
NF2317_low_1
[»] chr4 (15 HSPs)
chr4 (669-861)||(21390955-21391147)
chr4 (668-861)||(44275705-44275898)
chr4 (665-863)||(6112627-6112825)
chr4 (669-860)||(3672274-3672466)
chr4 (668-861)||(28093094-28093288)
chr4 (671-861)||(35544911-35545102)
chr4 (669-860)||(49243815-49244006)
chr4 (668-861)||(7217764-7217958)
chr4 (668-860)||(45829256-45829448)
chr4 (669-861)||(46192358-46192551)
chr4 (669-861)||(52191200-52191392)
chr4 (731-855)||(51038768-51038893)
chr4 (729-855)||(54849793-54849919)
chr4 (791-861)||(25437007-25437077)
chr4 (777-855)||(36157840-36157918)
[»] chr1 (12 HSPs)
chr1 (668-860)||(34307136-34307329)
chr1 (668-856)||(2509028-2509217)
chr1 (671-862)||(39249864-39250056)
chr1 (19-343)||(10412138-10412476)
chr1 (19-360)||(10417861-10418219)
chr1 (668-860)||(46901733-46901926)
chr1 (668-860)||(28647353-28647545)
chr1 (671-861)||(19258674-19258864)
chr1 (669-842)||(9642866-9643039)
chr1 (737-856)||(29099821-29099939)
chr1 (31-188)||(10421790-10421947)
chr1 (777-855)||(10146971-10147049)
[»] chr2 (15 HSPs)
chr2 (667-861)||(16089821-16090014)
chr2 (668-860)||(33732569-33732761)
chr2 (667-857)||(44958116-44958307)
chr2 (666-860)||(36315561-36315756)
chr2 (672-861)||(3830900-3831087)
chr2 (665-869)||(37498858-37499065)
chr2 (718-861)||(14572994-14573137)
chr2 (19-234)||(30633097-30633312)
chr2 (19-234)||(30660826-30661041)
chr2 (667-860)||(6376236-6376424)
chr2 (19-235)||(30669505-30669721)
chr2 (669-861)||(37914236-37914428)
chr2 (726-860)||(24137149-24137287)
chr2 (19-169)||(30631057-30631207)
chr2 (669-852)||(41188777-41188961)
[»] chr8 (16 HSPs)
chr8 (667-860)||(30432339-30432532)
chr8 (669-860)||(42162598-42162790)
chr8 (667-860)||(36189216-36189408)
chr8 (668-857)||(18184556-18184745)
chr8 (667-863)||(31318802-31318999)
chr8 (669-861)||(10203663-10203856)
chr8 (667-857)||(12665347-12665539)
chr8 (677-859)||(44081781-44081964)
chr8 (669-854)||(33726017-33726203)
chr8 (667-862)||(43186025-43186220)
chr8 (19-202)||(13563200-13563383)
chr8 (709-840)||(42668821-42668952)
chr8 (670-812)||(38845023-38845165)
chr8 (769-855)||(31547-31633)
chr8 (669-855)||(3690602-3690788)
chr8 (719-838)||(35849502-35849623)
[»] chr7 (26 HSPs)
chr7 (668-860)||(45782658-45782851)
chr7 (669-861)||(36346564-36346756)
chr7 (668-860)||(42220962-42221154)
chr7 (668-863)||(26972201-26972397)
chr7 (668-860)||(28307493-28307686)
chr7 (667-854)||(31148296-31148483)
chr7 (669-862)||(7700476-7700670)
chr7 (668-860)||(34108426-34108619)
chr7 (669-860)||(7699882-7700074)
chr7 (669-860)||(7700080-7700272)
chr7 (669-860)||(7700278-7700470)
chr7 (665-857)||(34828069-34828260)
chr7 (668-860)||(13108148-13108339)
chr7 (667-860)||(5811161-5811354)
chr7 (667-854)||(23980137-23980324)
chr7 (683-860)||(30887700-30887877)
chr7 (721-856)||(21807374-21807509)
chr7 (660-818)||(46475066-46475225)
chr7 (71-359)||(29625336-29625643)
chr7 (668-839)||(36957450-36957620)
chr7 (711-860)||(15020282-15020428)
chr7 (726-855)||(38321014-38321143)
chr7 (731-821)||(20086690-20086780)
chr7 (668-762)||(29953570-29953665)
chr7 (765-818)||(42950109-42950162)
chr7 (667-744)||(42950034-42950111)
[»] chr3 (22 HSPs)
chr3 (665-862)||(43999987-44000185)
chr3 (669-861)||(21559560-21559753)
chr3 (667-861)||(51339781-51339973)
chr3 (669-861)||(36370337-36370530)
chr3 (671-861)||(36749405-36749596)
chr3 (669-861)||(46111943-46112136)
chr3 (670-860)||(22894680-22894870)
chr3 (668-860)||(34749896-34750089)
chr3 (668-861)||(30735494-30735687)
chr3 (669-860)||(38231293-38231484)
chr3 (668-857)||(48200688-48200878)
chr3 (664-863)||(39467096-39467295)
chr3 (762-860)||(29460660-29460758)
chr3 (762-860)||(29471512-29471610)
chr3 (669-862)||(39072278-39072466)
chr3 (731-861)||(50966130-50966256)
chr3 (731-861)||(51069265-51069391)
chr3 (669-852)||(20856153-20856334)
chr3 (30-216)||(1153036-1153223)
chr3 (665-768)||(29472901-29473004)
chr3 (726-838)||(53638157-53638269)
chr3 (767-853)||(29820397-29820483)
[»] scaffold0062 (1 HSPs)
scaffold0062 (669-856)||(6722-6910)
[»] chr5 (25 HSPs)
chr5 (669-860)||(39370927-39371119)
chr5 (669-862)||(13347126-13347320)
chr5 (668-861)||(40887940-40888134)
chr5 (669-861)||(1815619-1815808)
chr5 (669-860)||(2237276-2237468)
chr5 (667-861)||(27553372-27553565)
chr5 (724-862)||(9408094-9408232)
chr5 (668-849)||(14831555-14831737)
chr5 (668-821)||(31800597-31800750)
chr5 (21-225)||(35752630-35752834)
chr5 (726-863)||(17225316-17225451)
chr5 (21-228)||(35364670-35364877)
chr5 (21-219)||(35404400-35404598)
chr5 (21-188)||(35374256-35374423)
chr5 (669-860)||(19596067-19596258)
chr5 (764-860)||(33404531-33404627)
chr5 (670-861)||(4300544-4300735)
chr5 (19-190)||(35421516-35421687)
chr5 (19-190)||(35434861-35435032)
chr5 (668-789)||(42683670-42683792)
chr5 (669-851)||(41003850-41004031)
chr5 (729-863)||(19124532-19124664)
chr5 (726-857)||(12164254-12164388)
chr5 (240-359)||(35404239-35404364)
chr5 (243-307)||(35364567-35364634)
[»] chr6 (7 HSPs)
chr6 (664-861)||(3986900-3987097)
chr6 (668-861)||(3118045-3118239)
chr6 (670-860)||(14022934-14023124)
chr6 (668-860)||(24208444-24208636)
chr6 (668-860)||(13697569-13697760)
chr6 (666-861)||(15345656-15345849)
chr6 (831-861)||(7674598-7674628)
[»] scaffold0043 (1 HSPs)
scaffold0043 (667-856)||(87160-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (795-833)||(5943-5981)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 8e-76; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 21390955 - 21391147
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||||| |||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttc 21391054  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  21391055 atctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 668 - 861
Target Start/End: Complemental strand, 44275898 - 44275705
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||||||||||||| |||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
     ||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  44275798 aatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 665 - 863
Target Start/End: Complemental strand, 6112825 - 6112627
Alignment:
Q  665 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 764  Q
    |||||||||||||||| |||||||  ||||||||||||   || ||||||   ||||| |||||||||||| ||||||||||||||||||||||| || |    
T  6112825 aataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctt 6112726  T
Q  765 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 863  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  6112725 tttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctctaa 6112627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 669 - 860
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||| ||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 668 - 861
Target Start/End: Original strand, 28093094 - 28093288
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||| | ||||||||||||   || ||||||  | ||||| |||||||||||| |||| ||||||||||||||||||||| |||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttt 28093193  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28093194 tcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 671 - 861
Target Start/End: Complemental strand, 35545102 - 35544911
Alignment:
Q  671 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattttca 769  Q
    |||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  770 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    | ||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 669 - 860
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||||  |||||| | |||||||||||||  || ||||||   ||||| |||||||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 668 - 861
Target Start/End: Complemental strand, 7217958 - 7217764
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| || ||||| |||||||||||||  || |||||| | ||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttt 7217859  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    | ||||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  7217858 ttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 45829256 - 45829448
Alignment:
Q  668 aggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||||| |||||| ||||||| ||| |||||| | ||| ||  |||||||||||| | |||| |||||| || ||||||| |||    
T  45829256 aggaaaaagataggtagacacccttttttgatacacc-tttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcaccccttt 45829354  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  45829355 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 669 - 861
Target Start/End: Complemental strand, 46192551 - 46192358
Alignment:
Q  669 ggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| |||||| |||||||  || |||||| | |||||   |||||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
     |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 52191200 - 52191392
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||| || ||||||| ||||| |||||||  | ||||||| | ||| ||||||| |||||||||||||||  ||||| ||||||| |   | |     
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctctt 52191299  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||  ||||||||||||||||||||| |||||||| | ||||||| ||| ||||||| |||||||||||||||||| |||||||||| |||||    
T  52191300 atcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 731 - 855
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  731 tattttagtaattttacatcatatcatcaccca-ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 829  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||   |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  830 gccacctaaggtggttcatgtataag 855  Q
    ||||||||||||||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 729 - 855
Target Start/End: Complemental strand, 54849919 - 54849793
Alignment:
Q  729 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 828  Q
    ||||||||| |||||| |||||| ||||||| ||  | ||||||||||||||||| |||||||||| |||||||| || |||||||| | |||  |||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgta 54849820  T
Q  829 tgccacctaaggtggttcatgtataag 855  Q
     || | |||||||||||||||||||||    
T  54849819 cgctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 791 - 861
Target Start/End: Original strand, 25437007 - 25437077
Alignment:
Q  791 tcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||| |||||||| ||||| ||| ||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataagggctct 25437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 777 - 855
Target Start/End: Complemental strand, 36157918 - 36157840
Alignment:
Q  777 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 855  Q
    |||||||||||||||||||| |||||| | ||| || |||| |||  ||||||||||||||| || || ||| ||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaaagtcgtccatatataag 36157840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 5e-74; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 34307136 - 34307329
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| ||||||||||||||||||||||  || |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  34307236 tcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 668 - 856
Target Start/End: Complemental strand, 2509217 - 2509028
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| ||||||| ||||||||||||||  || |||||| | |||||| |||||| |||||||||||||||||||||||||| ||||| |||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttt 2509118  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 856  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  2509117 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 671 - 862
Target Start/End: Original strand, 39249864 - 39250056
Alignment:
Q  671 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttca 769  Q
    |||||||||| ||||||||||||||||||||||  || |||||| | | |||| |||||||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  770 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcta 39250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 10412138 - 10412476
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||| ||| |||| |||  ||| |||||||||||||||||    
T  10412138 aggatggtccaagagtaccacccaagttttgattttccaaatgcaagacagaaactctcatgtgtcgacgaccgcattcaactccctgccattcacagaa 10412237  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaa 218  Q
    |||||||||||| |||||||||||||  | || | |||||| ||||||||| |||||||||||||||||||| ||  ||| |||| |   ||||||||||    
T  10412238 atgtagagactcattccatgatggcaaagaatcttgtacaccatttgtaagcttttccttcaaagcaagcaaagcatgctcatcaatcgctgaactcaaa 10412337  T
Q  219 gcaagagcaattgttgctaat---------------aacatttggctagcaaagcaaagaagaaaagacataaaaattctcattttgctattggagaata 303  Q
    ||||||| ||  || ||| ||               ||||||||||| | |||||| ||||| || | |||||||||||||||||| |||||  ||||||    
T  10412338 gcaagagtaacagtagctgatggcatgtaatgcatgaacatttggctggaaaagcagagaagtaacgtcataaaaattctcatttttctatt-tagaata 10412436  T
Q  304 tgtaatatgggtaaccaaataacacttctagtgcatatgc 343  Q
    ||||| |||||||||||||  | |||||||||||||||||    
T  10412437 tgtaacatgggtaaccaaaagatacttctagtgcatatgc 10412476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 10417861 - 10418219
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||||  ||| ||||||||||||||| |||||||| |||  || ||||| ||||||||    
T  10417861 aggatggtccaagagtaccacccaatgtttgattttccaaatgcaaggaagagactctcatgtgacgacgaccacatctaatcccttgccaatcacagaa 10417960  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaa 218  Q
    |||||||||||| ||| |||||||||  | || |||||||| ||||||||| |||||||||||||||||||| ||  |||||||||| | || |||||||    
T  10417961 atgtagagactcattctatgatggcaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcagtctctgtactcaaa 10418060  T
Q  219 gcaagagcaattgttgctaat------------------aacatttggctagcaaagcaaagaagaaaagacataaaaattctcattttgctattggaga 300  Q
    ||| ||||||  || ||| ||                  ||||||||| |||||||||| ||||| || | ||||||||||||||||||||||||  |||    
T  10418061 gcatgagcaacagtcgctgatggcatgtaataaaacacgaacatttggatagcaaagcagagaagtaatgtcataaaaattctcattttgctatt-aaga 10418159  T
Q  301 atatgtaatatgggtaaccaaataacacttctagtgcatatgcagctttgagatatgata 360  Q
    |||| |||||||||||||||||||| | ||  ||||||||| | ||||| | ||||||||    
T  10418160 atatttaatatgggtaaccaaataatagtttgagtgcatatactgctttaatatatgata 10418219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 46901733 - 46901926
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||| | |||||||||||    || |||||| | | |||| | ||| |||||| |||||||||||||||||||||||||| |||    
T  46901733 aggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttt 46901832  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46901833 tcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 668 - 860
Target Start/End: Complemental strand, 28647545 - 28647353
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||||||| ||||| ||||| |  |  |||||||| |||||||||||  ||||||| |||||| |||||| |||| ||||| ||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||| ||||||||||||||||| ||  | |||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||    
T  28647445 catctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 671 - 861
Target Start/End: Original strand, 19258674 - 19258864
Alignment:
Q  671 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcat 770  Q
    |||||||||| |||||||| ||||| ||||| |  |  |||||| | |||||||||||  ||||||| |||||| |||||| |||| ||||| |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  771 ctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||| |||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  19258774 ctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 669 - 842
Target Start/End: Original strand, 9642866 - 9643039
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt-t 767  Q
    |||||||||||| ||||||  |||||| ||||| |  || || |||  |||||||| |||| | |||||||||||| |||||||||||||||||  || |    
T  9642866 ggaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtgt-agggatgttttagtaatttcacatcatatcatcacccccttct 9642964  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtg 842  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||||||| ||||||| ||||||||    
T  9642965 catctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgccatctaaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 737 - 856
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  737 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacct 836  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||||| ||||||||||||||||||  ||||| | |||||||||| ||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaaga-gtgtatgccatct 29099841  T
Q  837 aaggtggttcatgtataaga 856  Q
    ||||||||| ||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 10421790 - 10421947
Alignment:
Q  31 gagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaaatgtagagactc 130  Q
    |||||||||||||| ||||||| || ||||||||   |   |||||||||||||||  |||||||||||  |||||||| |||||||||| |||||||||    
T  10421790 gagtaccacccaatgtttgattctcgaaatgcaaagaaatgactctcatgtgacgactaccacatgtaatcccctgccactcacagaaatatagagactc 10421889  T
Q  131 gttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagc 188  Q
     |||||||||||||  | || |||||||| |||||||||  |||| ||||||||||||    
T  10421890 attccatgatggcaaagaatctggtacaccatttgtaagcgtttctttcaaagcaagc 10421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 777 - 855
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  777 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 855  Q
    ||||| |||||||| ||| |||||||| |||||||||| || ||| |||||||||||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 3e-72; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 667 - 861
Target Start/End: Complemental strand, 16090014 - 16089821
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| ||||||||||||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||| ||||  |||    
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccaccttttt 16089915  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  16089914 t-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 668 - 860
Target Start/End: Complemental strand, 33732761 - 33732569
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | ||| | ||||||||||||||||||||||||||||||||| ||||| ||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33732661 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 667 - 857
Target Start/End: Complemental strand, 44958307 - 44958116
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 765  Q
    |||||||||||||| |||||| | |||||||||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 44958208  T
Q  766 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 857  Q
    || |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44958207 tttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 666 - 860
Target Start/End: Complemental strand, 36315756 - 36315561
Alignment:
Q  666 ataggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 764  Q
    ||||||||||||||| |||||| |||||||| |||||||  || |||||| ||||||||| |||||||||||| | |||| |||||| || ||||||  |    
T  36315756 ataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctct 36315657  T
Q  765 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36315656 ttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 672 - 861
Target Start/End: Original strand, 3830900 - 3831087
Alignment:
Q  672 aaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatc 771  Q
    ||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  772 tcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 665 - 869
Target Start/End: Original strand, 37498858 - 37499065
Alignment:
Q  665 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccca 763  Q
    |||||||||||||||| |||||||| ||||| |||||||  || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  37498858 aataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccct 37498957  T
Q  764 --ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
      ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| | |||||||||  |||| ||||| || ||||||||||||    
T  37498958 ctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctct 37499057  T
Q  862 aagaaata 869  Q
    || |||||    
T  37499058 aataaata 37499065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 718 - 861
Target Start/End: Complemental strand, 14573137 - 14572994
Alignment:
Q  718 catgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  14573137 catgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 14573038  T
Q  818 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  14573037 aaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 30633312 - 30633097
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||| ||| ||||| ||||| ||| |||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||  || | ||||||||||||    
T  30633312 aggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggcagagactctcatgtgacgacgaccacatgtaatcccttcccattcacagaa 30633213  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaa 218  Q
    |||||||||||| |||||||||||||    || || ||||| ||||||||| |||||||||||||||||||| |||||||||||||| | |||| |||||    
T  30633212 atgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaagctagcttatcagtctttgaattcaaa 30633113  T
Q  219 gcaagagcaattgttg 234  Q
    | ||| ||||||||||    
T  30633112 gaaagtgcaattgttg 30633097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 30661041 - 30660826
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||| ||| ||||| ||||| ||| |||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||  || | ||||||||||||    
T  30661041 aggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggcagagactctcatgtgacgacgaccacatgtaatcccttcccattcacagaa 30660942  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaa 218  Q
    |||||||||||| |||||||||||||    || || ||||| ||||||||| |||||||||||||||||||| |||||||||||||| | |||| |||||    
T  30660941 atgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaagctagcttatcagtctttgaattcaaa 30660842  T
Q  219 gcaagagcaattgttg 234  Q
    | ||| ||||||||||    
T  30660841 gaaagtgcaattgttg 30660826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 667 - 860
Target Start/End: Original strand, 6376236 - 6376424
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||| | ||||| |||||||     ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattt 6376335  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||     | ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  6376336 tcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 30669721 - 30669505
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||| ||| ||||| ||||| ||| |||||||||| ||||||||| |||  ||||||||||||||| ||||||||||||  || | ||||||||||||    
T  30669721 aggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggcagtgactctcatgtgacgacgaccacatgtaatcccttcccattcacagaa 30669622  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaa 218  Q
    |||||||||||| |||||||||||||    || |||||||| ||||||||| |||||||||||||||||||| || ||||||||||| | |||| |||||    
T  30669621 atgtagagactcattccatgatggcaaataatatggtacaccatttgtaagcttttccttcaaagcaagcaaagccagcttatcagtctttgaattcaaa 30669522  T
Q  219 gcaagagcaattgttgc 235  Q
    | ||| || ||||||||    
T  30669521 gaaagtgcgattgttgc 30669505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 37914236 - 37914428
Alignment:
Q  669 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | |||||   | |||||||||| | |||| |||||| || ||||||| ||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtacca-gggtattttaatcatttcacatcacattatcacccctttt 37914334  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
     |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  37914335 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 726 - 860
Target Start/End: Original strand, 24137149 - 24137287
Alignment:
Q  726 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg----ggtgtaaaa 821  Q
    ||||||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||    ||||| |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  822 aggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
     ||||||| ||||||||||||||| |||||||| |||||    
T  24137249 gggtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 30631207 - 30631057
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||| ||| ||||| ||||| ||| |||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||  || | ||||||||||||    
T  30631207 aggatgatccaagagtgccaccaaatgtttgattttccaaatgcaaggcagagactctcatgtgacgacgaccacatgtaatcccttcccattcacagaa 30631108  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaag 169  Q
    |||||||||||| |||||||||||||    || |||||||| |||||||||    
T  30631107 atgtagagactcattccatgatggcaaataatctggtacaccatttgtaag 30631057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 669 - 852
Target Start/End: Complemental strand, 41188961 - 41188777
Alignment:
Q  669 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||  ||||||| |||| | |||||||  |  |||||||| ||||||| || | ||||||||||||||||||||| ||||||| || ||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctttt 41188862  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 852  Q
    ||| || | |||||||||||||| ||| ||||| |||| ||| | | | ||||| |||||||| ||| ||| |||||||||||||    
T  41188861 catatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatgtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 1e-71; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 667 - 860
Target Start/End: Complemental strand, 30432532 - 30432339
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||| |||||||||| |||||||||||||  || |||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttt 30432433  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  30432432 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 669 - 860
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||  ||||||||||||  ||| |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 667 - 860
Target Start/End: Complemental strand, 36189408 - 36189216
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||| | ||| |||||||||||||||| |||||||| ||||||||||||| | |||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactccttt 36189310  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36189309 tcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 668 - 857
Target Start/End: Complemental strand, 18184745 - 18184556
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||||| | ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 857  Q
    ||||||||| |||||||||||   |||||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||||| ||||||||    
T  18184645 catctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 667 - 863
Target Start/End: Complemental strand, 31318999 - 31318802
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatt 765  Q
    |||||||||||||| |||||| | ||||||||||||   || | |||| | | |||| ||||| |||||| |||||||||||||||||||||||||| ||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttt 31318900  T
Q  766 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 863  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  31318899 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctctaa 31318802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 669 - 861
Target Start/End: Complemental strand, 10203856 - 10203663
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| ||||||||||| |  || |||||| | |||||| |||||| |||||||||||||||| ||||||||| ||||| ||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  10203756 catctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 667 - 857
Target Start/End: Complemental strand, 12665539 - 12665347
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 765  Q
    |||||||||||||| |||||| | |||||| ||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 12665440  T
Q  766 ttc-atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 857  Q
    ||  |||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12665439 ttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 677 - 859
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  677 atagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctctt 775  Q
    |||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  776 ctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagct 859  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 669 - 854
Target Start/End: Complemental strand, 33726203 - 33726017
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca-tttt 767  Q
    |||||||||||| |||||||| ||||| |||||||     ||||||  |||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 854  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  33726103 catctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 667 - 862
Target Start/End: Complemental strand, 43186220 - 43186025
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||| | ||||||||||||   || |||||| |  |||| ||||||| |||| |||||||||| ||||||||||||||  |||    
T  43186220 taggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttt 43186121  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||  |||||||||  || |||||||||||| |||||| |||||||||| |||||    
T  43186120 tcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactcta 43186025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 13563383 - 13563200
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||||||| | |||| ||||| || ||||||| |  ||||||||| |||| |||| ||||||||||  |||||||||||| |||||||||||||||||    
T  13563383 aggatggtccaaaagtagcaccccatgtttgattcttcaaatgcaaggcagagactcgcatgtgacgaccaccacatgtaaccccctgccattcacagaa 13563284  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatc 202  Q
    |||||||||||| ||||||||||| || | ||  || || | ||||||||| ||||||| |||||||||||| |||||||||||    
T  13563283 atgtagagactcattccatgatggtagagaatcgggcacgccatttgtaagcttttcctacaaagcaagcaaagctagcttatc 13563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 709 - 840
Target Start/End: Original strand, 42668821 - 42668952
Alignment:
Q  709 tgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgt 807  Q
    |||||||||| ||||  |||||||||| ||||||||| |||||||| |||||||  | | ||| |||||||| |||||||||| |||||||||||| |||    
T  42668821 tgtacatctccatgttgtaggggtattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgt 42668919  T
Q  808 gtgtgggtgtaaaaaggtgtatgccacctaagg 840  Q
    |||||||||| |||  |||||||||||||||||    
T  42668920 gtgtgggtgtcaaagtgtgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 670 - 812
Target Start/End: Original strand, 38845023 - 38845165
Alignment:
Q  670 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||||||| ||||| ||||| ||||||| ||  |||||| | | ||||||||||| ||||||||||||||  ||||| |||||||||| | ||     
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccctctt- 38845121  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg 812  Q
    |||| |||||||||| |||||  ||| |||||||| ||||||||    
T  38845122 atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 769 - 855
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 855  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||  |||||||| ||||||| |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 855
Target Start/End: Original strand, 3690602 - 3690788
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    ||||||||||||||||||| | ||||| ||||||| ||  | || ||   |||||| || |||||||| |||||||  || || |||||||||   | ||    
T  3690602 ggaaaaagatagatagacatccttttttatacacctttcatatatattctatgtgtcagaggtatttttgtaatttcgcaacacatcatcacctcatctc 3690701  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 855  Q
    ||||||||||| ||| |||| |  || |||||||| ||||||||| | | ||| | |||||| |||||||| || ||||||||||||    
T  3690702 atctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 719 - 838
Target Start/End: Original strand, 35849502 - 35849623
Alignment:
Q  719 atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttca--atgtttttgtcacgtgtcacaaatgtgtgtgggtg 816  Q
    |||||| |||||  ||||| |||||| | |||| |||||| ||| || ||||||||||||| |  || |||||| || ||||||||| |||||||  |||    
T  35849502 atgtgtcaggggggttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtg 35849601  T
Q  817 taaaaaggtgtatgccacctaa 838  Q
    | ||| | ||||||||||||||    
T  35849602 ttaaatgatgtatgccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 1e-71; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 45782658 - 45782851
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||||| ||||| ||||||  ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 45782757  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  45782758 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 36346564 - 36346756
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-tttt 36346662  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  36346663 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 42220962 - 42221154
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| ||||||||||||| ||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  42220962 aggaaaaagataggtagacaccttttt-catacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccccttt 42221060  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    | || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42221061 ttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 668 - 863
Target Start/End: Original strand, 26972201 - 26972397
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 26972300  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 863  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26972301 tcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctaa 26972397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 28307493 - 28307686
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||| |||||||||||||||  || |||||| | | || ||||| ||||||||||||||||||||||||||||||||||| |||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttt 28307592  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  28307593 tcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 667 - 854
Target Start/End: Complemental strand, 31148483 - 31148296
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||||  |||||||||||||  || |  ||| | ||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattt 31148384  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 854  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  31148383 tcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 669 - 862
Target Start/End: Original strand, 7700476 - 7700670
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  7700576 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctcta 7700670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 668 - 860
Target Start/End: Complemental strand, 34108619 - 34108426
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| || ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34108520  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  34108519 tcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 669 - 860
Target Start/End: Original strand, 7699882 - 7700074
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7699982 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 669 - 860
Target Start/End: Original strand, 7700080 - 7700272
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700180 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 669 - 860
Target Start/End: Original strand, 7700278 - 7700470
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700378 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 665 - 857
Target Start/End: Complemental strand, 34828260 - 34828069
Alignment:
Q  665 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 764  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | ||| |||||||||||||||||||||||||||||||||||||| |  |    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcact 34828161  T
Q  765 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 857  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||    
T  34828160 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 668 - 860
Target Start/End: Complemental strand, 13108339 - 13108148
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||||||| ||||| ||||||| ||  |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||     
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt- 13108241  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||    
T  13108240 catctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 667 - 860
Target Start/End: Original strand, 5811161 - 5811354
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | ||||||||||||| ||||||| |||||||| |||||    
T  5811261 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 667 - 854
Target Start/End: Complemental strand, 23980324 - 23980137
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||| | ||||| |||||   |   |||||||||||| |||||| |||||||||||||||| |||||| ||| |||||| |||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttt 23980225  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 854  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  23980224 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 683 - 860
Target Start/End: Complemental strand, 30887877 - 30887700
Alignment:
Q  683 agacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaa 782  Q
    ||||||| ||||||||||||   || | |||| | ||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  30887877 agacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaa 30887778  T
Q  783 tgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  30887777 tgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 721 - 856
Target Start/End: Original strand, 21807374 - 21807509
Alignment:
Q  721 gtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaa 820  Q
    |||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||    
T  21807374 gtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaa 21807473  T
Q  821 aaggtgtatgccacctaaggtggttcatgtataaga 856  Q
    | ||||||||||| ||||||||||||||||||||||    
T  21807474 atggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 660 - 818
Target Start/End: Complemental strand, 46475225 - 46475066
Alignment:
Q  660 taagaaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgtta-ggggtattttagtaattttacatcatatcatc 758  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||  |  |||||||||||||||||| |||||||||||||||||| |||||| ||| ||    
T  46475225 taagatataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtc 46475126  T
Q  759 acccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 818  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  46475125 accccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 71 - 359
Target Start/End: Original strand, 29625336 - 29625643
Alignment:
Q  71 aactctcatgtgacgatgaccacatgtaacaccctgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagt 170  Q
    ||||||||||||  ||||| |||||||||  || ||||||||||||||||||| |||||| |||||||||||||| | ||  |  || | ||| |||||     
T  29625336 aactctcatgtgtggatgatcacatgtaatcccttgccattcacagaaatgtaaagactcattccatgatggcagagaatccgacaccccattcgtaagc 29625435  T
Q  171 ttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaattgttgctaat---------------aacatttggctagcaa 255  Q
    |||||||||||||||||||| || ||||||||||||| ||||||| ||| || ||||| ||||||||||               |||||||| || ||||    
T  29625436 ttttccttcaaagcaagcaaagcgagcttatcagtgtctgaactcgaagaaatagcaaatgttgctaatggccagtcatacaccaacatttgacttgcaa 29625535  T
Q  256 agcaaagaagaaaagacataaaaattctcattttgctattggagaatatgtaatatgggtaaccaaataaca----cttctagtgcatatgcagctttga 351  Q
    |||| ||||||||     |||||||||||||||||||| ||||||||||||| |||||||||| |||||| |    |||||| |||||||||||||||||    
T  29625536 agcagagaagaaacattgtaaaaattctcattttgctagtggagaatatgtattatgggtaacaaaataataatatcttctaatgcatatgcagctttga 29625635  T
Q  352 gatatgat 359  Q
    ||| ||||    
T  29625636 gatttgat 29625643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 668 - 839
Target Start/End: Complemental strand, 36957620 - 36957450
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||||||  ||||| ||||||| ||  | |||| | |||||||| ||||||||||||||||||||||| | || |||| |||||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacattacattatcatccatttt 36957522  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaag 839  Q
    ||||||||||| |||| ||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  36957521 catctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 711 - 860
Target Start/End: Complemental strand, 15020428 - 15020282
Alignment:
Q  711 tacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 810  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||| ||||||||||||||||||||| ||  |||||||||  ||||    
T  15020428 tacatctcatgtgttagggatattttagtaatttcacatcatatcttcaccc-ctttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgtg 15020332  T
Q  811 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||| | ||||||||||||| ||||||| |||||||| |||||    
T  15020331 tgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 726 - 855
Target Start/End: Complemental strand, 38321143 - 38321014
Alignment:
Q  726 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 825  Q
    |||| |||||||||| ||| |||||| | |||||||   | |||| ||||||||||||||||||| ||| |||||||| ||| ||||||||| |||| ||    
T  38321143 agggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgt 38321044  T
Q  826 gtatgccacctaaggtggttcatgtataag 855  Q
    |||||||||||||| ||||| |||||||||    
T  38321043 gtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 731 - 821
Target Start/End: Original strand, 20086690 - 20086780
Alignment:
Q  731 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 821  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||||||| |||||||||| ||  |||| ||||||| |||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaa 20086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 762
Target Start/End: Original strand, 29953570 - 29953665
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccc 762  Q
    ||||||||||||| |||||||| ||||||||||||   || |||| |  || |||| |||||| ||||| ||||||||||||||||||||||||||    
T  29953570 aggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 818
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  765 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 818  Q
    ||||||||||| ||||||||| |||| ||| | |||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 744
Target Start/End: Original strand, 42950034 - 42950111
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 744  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| | ||||| | |||||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 7e-70; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 665 - 862
Target Start/End: Complemental strand, 44000185 - 43999987
Alignment:
Q  665 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcaccca 763  Q
    |||||||||||||||| |||||||  ||||||||||||  ||| |||||  | |||||| |||| ||||||| ||||||||||||||||||||||||||     
T  44000185 aataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccct 44000086  T
Q  764 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44000085 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctcta 43999987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 669 - 861
Target Start/End: Complemental strand, 21559753 - 21559560
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||||||||||| |||||||||||||  || |||||| | | ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 667 - 861
Target Start/End: Original strand, 51339781 - 51339973
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||| |||||||| |||||||||||||  || ||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttt 51339880  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  51339881 tcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 36370337 - 36370530
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||| ||  ||||||||||||  ||| | |||| | |||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 671 - 861
Target Start/End: Complemental strand, 36749596 - 36749405
Alignment:
Q  671 aaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 769  Q
    |||||||||| |||||||  ||||||||||||  ||| |||||| | |||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  770 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 46111943 - 46112136
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| ||||||||||||| ||| | |||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||| ||||    
T  46112043 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 670 - 860
Target Start/End: Complemental strand, 22894870 - 22894680
Alignment:
Q  670 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||||||||||||| |||| |||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 668 - 860
Target Start/End: Original strand, 34749896 - 34750089
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||  ||||| | ||||||||||||   || |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34749995  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34749996 tcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 668 - 861
Target Start/End: Original strand, 30735494 - 30735687
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    | || ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  30735594 t-atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 669 - 860
Target Start/End: Complemental strand, 38231484 - 38231293
Alignment:
Q  669 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || || ||| |||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-atttt 38231386  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38231385 catatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 668 - 857
Target Start/End: Complemental strand, 48200878 - 48200688
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||| | ||||||||||||  ||| |||||| | | |||| ||| |||||||| ||||||||||||||||||||||| || |||    
T  48200878 aggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttt 48200779  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 857  Q
    ||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  48200778 tcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 664 - 863
Target Start/End: Original strand, 39467096 - 39467295
Alignment:
Q  664 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 763  Q
    ||||||||||||||||| || ||||| ||||| |||||||     |||||| ||||||||||| || |||||||||||||| | |||| ||| ||||||     
T  39467096 aaataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccc 39467195  T
Q  764 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 863  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| |||||||| || ||| ||||||| ||| |||| ||||||||    
T  39467196 ttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctctaa 39467295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 762 - 860
Target Start/End: Complemental strand, 29460758 - 29460660
Alignment:
Q  762 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29460758 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 762 - 860
Target Start/End: Complemental strand, 29471610 - 29471512
Alignment:
Q  762 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29471610 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 669 - 862
Target Start/End: Original strand, 39072278 - 39072466
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||||| |||||||  ||||| ||||| | ||  |||||| | ||||||| | ||||||||||||||     ||||| ||||||||||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttc 39072372  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
    ||||||||||| ||||||| || ||| |||||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||    
T  39072373 atctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctcta 39072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 731 - 861
Target Start/End: Complemental strand, 50966256 - 50966130
Alignment:
Q  731 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 830  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  831 ccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||| | |||||||||||||||||||    
T  50966159 ccacctaagat-gttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 731 - 861
Target Start/End: Complemental strand, 51069391 - 51069265
Alignment:
Q  731 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 830  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  831 ccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||| | |||||||||||||||||||    
T  51069294 ccacctaagat-gttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 669 - 852
Target Start/End: Original strand, 20856153 - 20856334
Alignment:
Q  669 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| | ||| |||||| | |||||||  |  |||||| | ||||||| |||||||||| |||||||||| |||| ||||||| || ||||    
T  20856153 ggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt 20856251  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 852  Q
     || |||| |||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  20856252 -atatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 1153223 - 1153036
Alignment:
Q  30 agagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacga-tgaccacatgtaacaccctgccattcacagaaatgtagagac 128  Q
    |||||||||||| |  ||||||| || |||||||||| ||| ||||||||||||  | ||||||||| |||| || ||||||| ||| ||||||||||||    
T  1153223 agagtaccaccccaggtttgattctccaaatgcaagatagagactctcatgtgagcactgaccacatttaaccccttgccatttacaaaaatgtagagac 1153124  T
Q  129 tcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactca 216  Q
    || |||||||| ||||| | ||  || || | |||||||||||||| ||||||||||||||| |||||||| || |||| ||||||||    
T  1153123 tcattccatgacggcagagaatcaggcacgccatttgtaagttttttcttcaaagcaagcaaagctagcttgtccgtgtctgaactca 1153036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 665 - 768
Target Start/End: Complemental strand, 29473004 - 29472901
Alignment:
Q  665 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 764  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | |||||||||||||||||||||||||||||||||||||||||| || |    
T  29473004 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccct 29472905  T
Q  765 tttc 768  Q
    ||||    
T  29472904 tttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 726 - 838
Target Start/End: Complemental strand, 53638269 - 53638157
Alignment:
Q  726 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 825  Q
    ||||||||||||| |||||||||||| ||||||||||  | |||||||||||||| ||||||||  ||| |||||| | ||||||||||||| ||| |||    
T  53638269 aggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggt 53638170  T
Q  826 gtatgccacctaa 838  Q
    |||||||||||||    
T  53638169 gtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 767 - 853
Target Start/End: Original strand, 29820397 - 29820483
Alignment:
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtata 853  Q
    ||||||||||||| ||||||||||  || | |||||| ||| ||||||||| |||  |||||||||||||||||||||  |||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 129; Significance: 3e-66; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 669 - 856
Target Start/End: Complemental strand, 6910 - 6722
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||| ||||||||||||||||   || |||||| | |||||| |||||| ||||| |||||||||||||||||||||||||| ||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 856  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6810 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 3e-66; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 669 - 860
Target Start/End: Complemental strand, 39371119 - 39370927
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39371019 catctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 669 - 862
Target Start/End: Complemental strand, 13347320 - 13347126
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctcta 13347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 668 - 861
Target Start/End: Original strand, 40887940 - 40888134
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | | || | |||| |||||||||||||||||||||||||||| ||||| |||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttt 40888039  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  40888040 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 669 - 861
Target Start/End: Original strand, 1815619 - 1815808
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 768  Q
    |||||||||||| |||||||||||||||||| |  | |   ||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaaat---gtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  769 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  1815716 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 669 - 860
Target Start/End: Complemental strand, 2237468 - 2237276
Alignment:
Q  669 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | | | || |||||||||||| |||||||||||||||||||||||||| ||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  2237368 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 667 - 861
Target Start/End: Original strand, 27553372 - 27553565
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||| ||||||||||||| |||||||||||||  || |||||| |  |||||||||| |||||||||||||||||||||| || ||||||  |||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttt 27553470  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||    
T  27553471 tcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 724 - 862
Target Start/End: Original strand, 9408094 - 9408232
Alignment:
Q  724 ttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaag 823  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 9408193  T
Q  824 gtgtatgccacctaaggtggttcatgtataagagctcta 862  Q
    | ||||| ||||| |||||||||||||||||||||||||    
T  9408194 gcgtatgtcacctgaggtggttcatgtataagagctcta 9408232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 668 - 849
Target Start/End: Complemental strand, 14831737 - 14831555
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| | | | || |||||||||||| | |||||||||||||||||||||||| |||    
T  14831737 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttt 14831638  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatg 849  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14831637 tcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 668 - 821
Target Start/End: Complemental strand, 31800750 - 31800597
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||||  ||||||| |||||||||||||  ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 821  Q
    ||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  31800650 catcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaa 31800597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 35752834 - 35752630
Alignment:
Q  21 gatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaaat 120  Q
    |||||||| ||||| ||||||||| |||||||||| |||||||||  ||| ||||||||||||||| ||||||||||||  || |||||  |||||||||    
T  35752834 gatggtccaagagtgccacccaatgtttgattttccaaatgcaaggaagagactctcatgtgacgacgaccacatgtaatcccttgccacacacagaaat 35752735  T
Q  121 gtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagc 220  Q
    |||||||||| |||||||||||||  | || |||||||| ||||||||| |||||||| ||||||||||| || ||||||||||| || ||||||||||     
T  35752734 gtagagactcattccatgatggcaaagaatctggtacaccatttgtaagcttttcctttaaagcaagcaaagcaagcttatcagtctgcgaactcaaaga 35752635  T
Q  221 aagag 225  Q
    |||||    
T  35752634 aagag 35752630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 726 - 863
Target Start/End: Complemental strand, 17225451 - 17225316
Alignment:
Q  726 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 825  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |     
T  17225451 aggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--ga 17225354  T
Q  826 gtatgccacctaaggtggttcatgtataagagctctaa 863  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17225353 gtatgccacctaaagtggttcatgtataagagctctaa 17225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 35364877 - 35364670
Alignment:
Q  21 gatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaaat 120  Q
    |||||||| ||||||||||||||||||||||| || ||||||||   |   ||||||||||||||| ||||||||||||  || ||||||||||||||||    
T  35364877 gatggtccgagagtaccacccaatatttgattctccaaatgcaaagaaatgactctcatgtgacgacgaccacatgtaatcccttgccattcacagaaat 35364778  T
Q  121 gtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagc 220  Q
    |||||||||| |||||||||||||| | ||  |  |||| ||||||||| ||||| |||||||||||||| || || |||||||| ||||||||||||||    
T  35364777 gtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaagtttatcagtctgtgaactcaaagc 35364678  T
Q  221 aagagcaa 228  Q
    || |||||    
T  35364677 aaaagcaa 35364670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 35404598 - 35404400
Alignment:
Q  21 gatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaaat 120  Q
    |||||||| ||||| ||||||||| |||||||||| ||| ||||| |||| |||||| ||||| || ||||||||||||  || ||||||||||| ||||    
T  35404598 gatggtccaagagtgccacccaatgtttgattttccaaacgcaaggcagagactctcgtgtgatgacgaccacatgtaatcccttgccattcacaaaaat 35404499  T
Q  121 gtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaag 219  Q
    |||||||||  |||||||||||||  | || |||||||| ||||||||| ||||||||||| |||||||| || ||||||||||| | |||||||||||    
T  35404498 gtagagacttattccatgatggcaaagaatctggtacaccatttgtaagcttttccttcaatgcaagcaaagccagcttatcagtctttgaactcaaag 35404400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 35374423 - 35374256
Alignment:
Q  21 gatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaaat 120  Q
    |||||||| ||||| ||||||| | |||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  35374423 gatggtccgagagtgccacccagtgtttgattttccaaatgcaaggcagagactctcatgtgacgacgaccacatgtaactccttgccattcacagaaat 35374324  T
Q  121 gtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagc 188  Q
    ||| |||||| ||||||||||| || |  | |||||||| |||||| || ||||||||||||||||||    
T  35374323 gtaaagactcattccatgatggaagagagtctggtacaccatttgtgagcttttccttcaaagcaagc 35374256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 669 - 860
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  669 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    |||||||||||| |||||| |||||||| | | |||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    || |||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 764 - 860
Target Start/End: Original strand, 33404531 - 33404627
Alignment:
Q  764 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 670 - 861
Target Start/End: Original strand, 4300544 - 4300735
Alignment:
Q  670 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 769  Q
    ||||||||| |||||||| | ||||| ||||| |  |  |||||| |||||||||||||| ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  770 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    |||||| |||||||||||||| ||  |||||||||| ||||||||||||||| | | |||| |||||||  |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 35421687 - 35421516
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||||||| |||||||||||| |  |||||||||| |||||||||||||| ||||||||||| ||  |||| ||||||||||||| ||||||||||||    
T  35421687 aggatggtccaagagtaccaccccaattttgattttccaaatgcaagacagagactctcatgtggcgtcgaccgcatgtaacaccctcccattcacagaa 35421588  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaa 190  Q
    ||| ||||| || ||||||||||| || | ||  |||| || ||| ||||||||||| ||||||| ||||||    
T  35421587 atgaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaa 35421516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 35435032 - 35434861
Alignment:
Q  19 aggatggtcccagagtaccacccaatatttgattttctaaatgcaagacagaaactctcatgtgacgatgaccacatgtaacaccctgccattcacagaa 118  Q
    |||||||||| |||||||||||| |  |||||||||| |||||||||||||| ||||||||||| ||  |||| ||||||||||||| ||||||||||||    
T  35435032 aggatggtccaagagtaccaccccaattttgattttccaaatgcaagacagagactctcatgtggcgtcgaccgcatgtaacaccctcccattcacagaa 35434933  T
Q  119 atgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaa 190  Q
    ||  ||||| || ||||||||||| || | ||  |||| || ||| ||||||||||| ||||||| ||||||    
T  35434932 ataaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaa 35434861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 668 - 789
Target Start/End: Complemental strand, 42683792 - 42683670
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    |||||||||||||||||||| | |||||||||||||  || |||||| | | || | ||||||||||||||||||||||||||||||||| || || |||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttt 42683693  T
Q  767 tcatctcttctttcaatgttttt 789  Q
    |||||||||||||||||||||||    
T  42683692 tcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 669 - 851
Target Start/End: Original strand, 41003850 - 41004031
Alignment:
Q  669 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| ||| |||||||| | |||||||  |  |||||| | ||| ||| |||| || |||||||||||||||||| ||||||| || ||||    
T  41003850 ggaaaaagatagacagaaacctttttgttatacacctctcatgtacaccccatatgtcagggata-tttagtaattttacatcacatcatcatccctttt 41003948  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgta 851  Q
     || |||| ||||||| |||||| ||| ||||| |||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  41003949 tatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

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Target: chr5; HSP #22
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 729 - 863
Target Start/End: Original strand, 19124532 - 19124664
Alignment:
Q  729 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 828  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||| |||  ||||||| |||||||||||||  ||| |||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgt-caaatgtgta 19124629  T
Q  829 tgccacctaaggtggttcatgtataagagctctaa 863  Q
    ||||| ||||| | || ||||||||||| ||||||    
T  19124630 tgccatctaagatagtccatgtataagaactctaa 19124664  T

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Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 726 - 857
Target Start/End: Complemental strand, 12164388 - 12164254
Alignment:
Q  726 aggggtattttagtaattttacatcatatcatcacccattttcatctct---tctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaa 822  Q
    ||||| ||||||||||||| |||||| | ||||||||  |  |||||||   |||||||||||||||| ||| || ||||| |||||||| || | |||     
T  12164388 aggggcattttagtaatttcacatcacaccatcaccctctcccatctcttcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaag 12164289  T
Q  823 ggtgtatgccacctaaggtggttcatgtataagag 857  Q
      ||| ||||||||||| |||||||||||||||||    
T  12164288 aatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 35404364 - 35404239
Alignment:
Q  240 aacatttggctagcaaagcaaagaagaaa-agacataaaaattctcattttgctattggagaatatg---taatatgggtaaccaaataaca-cttctag 334  Q
    |||||||||||||||||||| |||||||  | | | ||||| | |||||||||||||||||||||||   || |||||||||| ||| || | |||||||    
T  35404364 aacatttggctagcaaagcagagaagaatcataaaaaaaaaat-tcattttgctattggagaatatgtattattatgggtaactaaagaataccttctag 35404266  T
Q  335 tgc--atatgcagctttgagatatgat 359  Q
    |||  ||||||||||||||||| ||||    
T  35404265 tgcatatatgcagctttgagatttgat 35404239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 35364634 - 35364567
Alignment:
Q  243 atttggctagcaaagcaaagaagaaa---agacataaaaattctcattttgctattggagaatatgta 307  Q
    |||||||||||||||||||||| |||    ||||||||| | |||||||| |||||| ||||||||||    
T  35364634 atttggctagcaaagcaaagaaaaaatatcgacataaaagtcctcatttttctattgaagaatatgta 35364567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 4e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 664 - 861
Target Start/End: Original strand, 3986900 - 3987097
Alignment:
Q  664 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 763  Q
    ||||||||||||||||| |||||| | |||||||||||    || |||| | | ||||| ||| |||||||| |||||||||||||||||| |||| ||     
T  3986900 aaataggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccc 3986999  T
Q  764 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3987000 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 3987097  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 668 - 861
Target Start/End: Original strand, 3118045 - 3118239
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 766  Q
    ||||||||||||| |||||| | ||||||||||| |  || |||||| || ||||| ||||||||||||||||||||||||||||| ||| ||||| |||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccaccctttt 3118144  T
Q  767 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    | |||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  3118145 ttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 670 - 860
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  670 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 769  Q
    ||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  770 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 668 - 860
Target Start/End: Complemental strand, 24208636 - 24208444
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||||| | ||||| |||||||  |  | |||| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||  |||||| ||||||| | ||||| |||||||| |||||    
T  24208536 catctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 668 - 860
Target Start/End: Complemental strand, 13697760 - 13697569
Alignment:
Q  668 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 767  Q
    ||||||||||||| |||| | | |||||||||||  | || |||||| | |||||||||| | |||||||||||||||| ||||||||||||||| ||||    
T  13697760 aggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  768 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 860  Q
    ||||||||||||||||||||||  ||||| |||||||||||| | ||||||||| |||| ||| || ||||| ||||| ||||||||||||||    
T  13697660 catctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 666 - 861
Target Start/End: Original strand, 15345656 - 15345849
Alignment:
Q  666 ataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 765  Q
    |||||||||| |||| |||||| ||||||||||||||   || |||||| |  |||| ||||||| |||| |||||||| | ||||||||||||||  ||    
T  15345656 ataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcacctttt 15345755  T
Q  766 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 861  Q
    ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||  || ||||||||||||||||||| |||||||||||||||    
T  15345756 ttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 831 - 861
Target Start/End: Original strand, 7674598 - 7674628
Alignment:
Q  831 ccacctaaggtggttcatgtataagagctct 861  Q
    |||||||||||||||||||||||||||||||    
T  7674598 ccacctaaggtggttcatgtataagagctct 7674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 121; Significance: 2e-61; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 667 - 856
Target Start/End: Original strand, 87160 - 87350
Alignment:
Q  667 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacat--catatcatcacccat 764  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||| ||   ||||||||||   |    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatt 87259  T
Q  765 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 856  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  87260 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 795 - 833
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  795 gtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 833  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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