View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2317_low_10 (Length: 472)

Name: NF2317_low_10
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2317_low_10
NF2317_low_10
[»] chr2 (4 HSPs)
chr2 (100-465)||(37081561-37081926)
chr2 (151-309)||(34590844-34591000)
chr2 (16-61)||(37081965-37082010)
chr2 (192-221)||(29985370-29985399)
[»] chr7 (1 HSPs)
chr7 (146-309)||(29538919-29539082)
[»] chr8 (1 HSPs)
chr8 (178-290)||(26838016-26838127)
[»] chr4 (5 HSPs)
chr4 (181-228)||(12880926-12880973)
chr4 (301-403)||(33469267-33469370)
chr4 (180-229)||(7619091-7619140)
chr4 (180-221)||(43625624-43625665)
chr4 (350-409)||(43625435-43625495)
[»] chr1 (4 HSPs)
chr1 (181-228)||(15182927-15182974)
chr1 (192-223)||(25426229-25426260)
chr1 (145-203)||(17059926-17059984)
chr1 (192-228)||(15416924-15416960)
[»] chr3 (2 HSPs)
chr3 (254-307)||(14545061-14545114)
chr3 (192-228)||(10951079-10951115)
[»] chr6 (2 HSPs)
chr6 (192-228)||(13248604-13248640)
chr6 (192-228)||(24968888-24968924)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 100 - 465
Target Start/End: Complemental strand, 37081926 - 37081561
Alignment:
Q  100 ccttgatatgttctttggacttgggacnnnnnnntttcaagttagtttgtcttcaaaccttcattgcactttattatctagcttccataactttcatgag 199  Q
    ||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37081926 ccttgatatgttcttcggacttgggacaaaaaaatttcaagttagtttgtcttcaaaccttcattgcactttattatctagcttccataacttccatgag 37081827  T
Q  200 gtgtcttgctttgccgaattacattatttaaacgataaaagagtcaatacgcaaatgaagttgtctgggtaggaaagaaataaaattacaataacttaaa 299  Q
    ||||||||||||| |||||||||| |||||||| |||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||    
T  37081826 gtgtcttgctttgtcgaattacatgatttaaaccataaaagactcaatatgccaatgaagttgtctaggtaggaaagaaataaaattacaataacttaaa 37081727  T
Q  300 ccaaaacatttcccaacccatgagaaactaactctaaaaacgttatatcatcttcaaatgcatagaaaatgactctaaaacatagctaaaaaatcataag 399  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37081726 ccaaaacatttcccaaaccatgagaaactcactctaaaaactttatatcatcttcaaatgcatagaaaatcactctaaaacatagctaaaaaatcataag 37081627  T
Q  400 atgagacgtcctcactatctcttctgaaatctccattttcttgaaaatattcatatttttggacat 465  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||  |||||||    
T  37081626 atgagacgtcatcactatctcttttgaaatctccattttcttgaaaatattcctattggtggacat 37081561  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 309
Target Start/End: Complemental strand, 34591000 - 34590844
Alignment:
Q  151 ttcaaaccttcattgcactttattatctagcttccataactttcatgaggtgtcttgctttgccgaattacattatttaaacgataaaagagtcaatacg 250  Q
    |||||||||||||||   || ||||| |||| ||||||||||||||||||||| ||||||| || |||||||| || ||| | |||||||| |||| |      
T  34591000 ttcaaaccttcattgattttcattatttagcatccataactttcatgaggtgttttgctttaccaaattacataatgtaatc-ataaaagactcaaaata 34590902  T
Q  251 caaatgaagttgtctgggtaggaaagaaataaaattacaataacttaaaccaaaacatt 309  Q
    || ||| ||| ||||  | ||| |||||||||||||||||| || |||| |||||||||    
T  34590901 catatggagtagtct-agaagggaagaaataaaattacaatgacgtaaatcaaaacatt 34590844  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 37082010 - 37081965
Alignment:
Q  16 caacaatgcacaggggttttgcaagggacacatggcccaaacatcg 61  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||    
T  37082010 caacaatgcacaagggttgtgcacgggacacatggcccaaacatcg 37081965  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 29985399 - 29985370
Alignment:
Q  192 ttcatgaggtgtcttgctttgccgaattac 221  Q
    ||||||||||||||||||||||||||||||    
T  29985399 ttcatgaggtgtcttgctttgccgaattac 29985370  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 309
Target Start/End: Complemental strand, 29539082 - 29538919
Alignment:
Q  146 ttgtcttcaaaccttcattgcactttattatctagcttccataactttcatgaggtgtcttgctttgccgaattacattatttaaacgataaaagagtca 245  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||| ||  ||  || |||  |||| ||||||||| |||||||  |||||||| | |    
T  29539082 ttgtcttcaaaccttcgtcgcacttgattatctagcttccataacttccaaaagaagtattgtcttgctgaattacatgatttaaatcataaaagactga 29538983  T
Q  246 atacgcaaatgaagttgtctgggtaggaaagaaataaaattacaataacttaaaccaaaacatt 309  Q
    | || |  ||||| || ||||| || | ||||||||| | ||| |  |||||||||||||||||    
T  29538982 aaacacctatgaaattatctggttaaggaagaaataagagtacgacgacttaaaccaaaacatt 29538919  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 26838127 - 26838016
Alignment:
Q  178 tagcttccataactttcatgaggtgtcttgctttgccgaattacattatttaaacgataaaagagtcaatacgcaaatgaagttgtctgggtaggaaaga 277  Q
    |||||||| |||||| |||||||||| || |||||  ||||||||| |||||| | |||||||| |||| || |  ||| |||| ||||| || | ||||    
T  26838127 tagcttccctaacttccatgaggtgtgtttctttgttgaattacatgatttaacc-ataaaagactcaaaacacctatgtagttatctggttatggaaga 26838029  T
Q  278 aataaaattacaa 290  Q
    |||||||||||||    
T  26838028 aataaaattacaa 26838016  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 12880926 - 12880973
Alignment:
Q  181 cttccataactttcatgaggtgtcttgctttgccgaattacattattt 228  Q
    |||||| || || |||||||||||||||||||||||||||||| ||||    
T  12880926 cttccaaaatttccatgaggtgtcttgctttgccgaattacatgattt 12880973  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 33469267 - 33469370
Alignment:
Q  301 caaaacatttcccaacccatgagaaactaactctaaaaacgttatatcatcttcaaatgcatagaaaatgactctaaaacatagctaaaaa-atcataag 399  Q
    ||||||||| ||||| ||||||| |||| || |||||| |  |||||  ||||||||||||||||||| ||||| ||||  || ||||||| |||||| |    
T  33469267 caaaacattccccaaaccatgagcaactcacactaaaacctctatattgtcttcaaatgcatagaaaaagactccaaaatgtaactaaaaacatcatatg 33469366  T
Q  400 atga 403  Q
    ||||    
T  33469367 atga 33469370  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 7619140 - 7619091
Alignment:
Q  180 gcttccataactttcatgaggtgtcttgctttgccgaattacattattta 229  Q
    ||||||||||||||||| || ||||||||||||  ||||||||| |||||    
T  7619140 gcttccataactttcataagatgtcttgctttgttgaattacatgattta 7619091  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 43625665 - 43625624
Alignment:
Q  180 gcttccataactttcatgaggtgtcttgctttgccgaattac 221  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||    
T  43625665 gcttcaataacttccatgaggtgtcttgctttgccaaattac 43625624  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 43625495 - 43625435
Alignment:
Q  350 tcttcaaatgcatagaaaatgactctaaaacatagctaaaaa-atcataagatgagacgtc 409  Q
    |||||||||||||| |||| ||||| |||||||| ||||||| |||||| |||||| ||||    
T  43625495 tcttcaaatgcatataaaaagactccaaaacatatctaaaaacatcatatgatgaggcgtc 43625435  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 15182974 - 15182927
Alignment:
Q  181 cttccataactttcatgaggtgtcttgctttgccgaattacattattt 228  Q
    |||||| ||||| |||||||||||||| ||||||||||||||| ||||    
T  15182974 cttccaaaacttccatgaggtgtcttgttttgccgaattacatgattt 15182927  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 25426229 - 25426260
Alignment:
Q  192 ttcatgaggtgtcttgctttgccgaattacat 223  Q
    ||||||||||||||||||||||||||||||||    
T  25426229 ttcatgaggtgtcttgctttgccgaattacat 25426260  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 17059926 - 17059984
Alignment:
Q  145 tttgtcttcaaaccttcattgcactttattatctagcttccataactttcatgaggtgt 203  Q
    |||||||| |||||||| |||  ||| ||||| |||||||||||||||| |||||||||    
T  17059926 tttgtctttaaaccttcgttgttcttaattatttagcttccataacttttatgaggtgt 17059984  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 15416924 - 15416960
Alignment:
Q  192 ttcatgaggtgtcttgctttgccgaattacattattt 228  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  15416924 ttcatgtggtgtcttgctttgccgaattacatgattt 15416960  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 14545061 - 14545114
Alignment:
Q  254 atgaagttgtctgggtaggaaagaaataaaattacaataacttaaaccaaaaca 307  Q
    |||||||||||||| |||| | ||||||||||||||| |||| ||| |||||||    
T  14545061 atgaagttgtctggttagggacgaaataaaattacaacaactcaaatcaaaaca 14545114  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 10951079 - 10951115
Alignment:
Q  192 ttcatgaggtgtcttgctttgccgaattacattattt 228  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  10951079 ttcatgaggtgtcctgctttgccgaattacatgattt 10951115  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 13248640 - 13248604
Alignment:
Q  192 ttcatgaggtgtcttgctttgccgaattacattattt 228  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  13248640 ttcatgaggtgtcttgctttgccgaaatacatgattt 13248604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 24968924 - 24968888
Alignment:
Q  192 ttcatgaggtgtcttgctttgccgaattacattattt 228  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  24968924 ttcatgaggtgtcttgctttgctgaattacatgattt 24968888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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