View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_low_12 (Length: 407)
Name: NF2317_low_12
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 49852475 - 49852205
Alignment:
| Q |
17 |
gcatagggattgttgaattcgggacgtggtgaaaggtaggtcaagatcaaaagaaggaaaacttgaagttttcggtagagaaggagaaaaagaagggtct |
116 |
Q |
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| T |
49852475 |
gcatagggattgttgaattcgggacgtggtgaaaggtaggtcaagatcaaaagaaggaaaacttgaagttttcggtagagaaggagaaaaagaagggtct |
49852376 |
T |
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| Q |
117 |
gaagattcggtagtagagaaaaaggttgtgaaaaaatcaatttcactggagaaggcaccgccaatctggagataaatgtctaattctgaaagtctaccat |
216 |
Q |
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| T |
49852375 |
gaagattcggtagtagagaaaaaggttgtgaaaaaatcaatttcactggagaaggcaccgccaatctggagataaatgtctaattctgaaagtctaccat |
49852276 |
T |
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| Q |
217 |
catagtagcagcagagccaaagcctagtgaagaaaaggaccatcataatcggaggaaccagaatcaaaagaaccagatgaag |
298 |
Q |
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| T |
49852275 |
catagtagcagcagagccaaag-----------gaattagcatcataatcggaggaaccagaatcaatagaaccagatgaag |
49852205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 49852204 - 49852149
Alignment:
| Q |
329 |
agtgtgcagaagataataacgactacgagtaattcataaattttaattaaccttta |
384 |
Q |
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| T |
49852204 |
agtgtgcagaagataataacgactacgagtaattcataaattttaattaaccttta |
49852149 |
T |
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