View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2317_low_13 (Length: 316)

Name: NF2317_low_13
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2317_low_13
NF2317_low_13
[»] chr2 (4 HSPs)
chr2 (129-306)||(24126259-24126442)
chr2 (154-297)||(42866006-42866155)
chr2 (147-297)||(11995595-11995751)
chr2 (147-257)||(40614911-40615027)
[»] chr5 (4 HSPs)
chr5 (154-297)||(239840-239989)
chr5 (154-297)||(14025024-14025173)
chr5 (129-296)||(32386578-32386751)
chr5 (185-269)||(30046713-30046798)
[»] chr7 (9 HSPs)
chr7 (129-297)||(8035800-8035974)
chr7 (154-297)||(38110543-38110692)
chr7 (147-306)||(45033540-45033705)
chr7 (154-297)||(46045996-46046145)
chr7 (148-265)||(5791323-5791446)
chr7 (129-297)||(5350083-5350255)
chr7 (197-273)||(2037608-2037685)
chr7 (129-297)||(3782444-3782614)
chr7 (198-295)||(7431729-7431827)
[»] chr8 (7 HSPs)
chr8 (129-297)||(45093530-45093704)
chr8 (154-289)||(33373295-33373436)
chr8 (147-297)||(42000364-42000520)
chr8 (147-269)||(35808319-35808447)
chr8 (129-257)||(31512243-31512378)
chr8 (141-295)||(9216314-9216475)
chr8 (198-294)||(14342862-14342958)
[»] chr1 (6 HSPs)
chr1 (154-297)||(6294105-6294254)
chr1 (129-297)||(16855034-16855208)
chr1 (154-258)||(38168207-38168317)
chr1 (184-306)||(5556081-5556204)
chr1 (140-295)||(28706083-28706243)
chr1 (154-297)||(39476149-39476298)
[»] chr4 (5 HSPs)
chr4 (129-297)||(44307613-44307787)
chr4 (154-297)||(1217248-1217397)
chr4 (154-297)||(1369523-1369672)
chr4 (147-295)||(36858670-36858824)
chr4 (154-297)||(28945237-28945386)
[»] chr3 (7 HSPs)
chr3 (197-297)||(25905900-25906001)
chr3 (198-297)||(37503178-37503278)
chr3 (198-289)||(3461499-3461591)
chr3 (183-268)||(1182622-1182708)
chr3 (183-236)||(43329071-43329124)
chr3 (139-294)||(30775560-30775723)
chr3 (129-177)||(43329125-43329173)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 129 - 306
Target Start/End: Original strand, 24126259 - 24126442
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacgga-----ctaagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||||     ||| |||||||||| || |||||||||||||||||||||||||||    
T  24126259 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggaagttcctaggcatgcaagccctggaaatatcatcaaacaaaagactctga 24126358  T
Q  224 agctcagta-ggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacctatg 306  Q
    |||||| || |||||||||||  |||||||||||||||||||||||| ||| | || |||||||||||||||||| ||| ||||    
T  24126359 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatctgcacttatg 24126442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 42866155 - 42866006
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || ||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  42866155 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 42866056  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||| | ||| | || ||||||||||| ||||||    
T  42866055 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatct 42866006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 297
Target Start/End: Original strand, 11995595 - 11995751
Alignment:
Q  147 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtc 240  Q
    |||||||||||||||||||||||||||||||||     ||  ||||||||| || |||||||||| ||| ||||||||||| |||||| |||||| ||||    
T  11995595 caaagaaaaagaaaactaagaaattaaacggacgttcctagacatgcaagcccttgaaatatcattaaaaaaaagactctggagctcactagggggagtc 11995694  T
Q  241 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||  ||||||||||| |||||||||||| ||| | || ||||||||||| ||||||    
T  11995695 tccagaatatgaaaatatagaaaatccatcgaaatgctgaaattagcaagacaatct 11995751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 40614911 - 40615027
Alignment:
Q  147 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagt-aggggagtc 240  Q
    |||||| ||||||||||||||||||||||||||     || |||||||||| | |||||||||||||||||||||||||||||||||| | |||||| ||    
T  40614911 caaagagaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaaggggattc 40615010  T
Q  241 tccgaaatatgaaaatc 257  Q
    |||  ||||||||||||    
T  40615011 tccataatatgaaaatc 40615027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 297
Target Start/End: Original strand, 239840 - 239989
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || ||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  239840 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 239939  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||||||||| | || ||||||||||| ||||||    
T  239940 tatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatct 239989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 14025173 - 14025024
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  14025173 aaagaaaactaagaaattaaacggacgttcttaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 14025074  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||| | ||| | || ||||||||||| ||||||    
T  14025073 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatct 14025024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 296
Target Start/End: Complemental strand, 32386751 - 32386578
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| |||||||| |||||||||| |||| ||||||||||||||| |     || |||| ||||  |  |||||||||||||||||||||||||||    
T  32386751 acaaaagagggcaaagtccaaagaaaaaaaaaattaagaaattaaacgggcgtttctaggcatacaagtcccggaaatatcatcaaacaaaagactctga 32386652  T
Q  224 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatc 296  Q
    |||||| |||||| |||||||  |||||||||||||||||||||||| ||| | || |||||||||||||||||    
T  32386651 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatc 32386578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 30046798 - 30046713
Alignment:
Q  185 atgcaagctctagaaatatcatcaaacaaaagactctgaagctcagta-ggggagtctccgaaatatgaaaatctagaaaatccat 269  Q
    ||||||||| |  ||||||||||||||||||||||||||| |||| || ||||| |||||  ||||||||||||||||||||||||    
T  30046798 atgcaagctttgaaaatatcatcaaacaaaagactctgaaactcactagggggattctccataatatgaaaatctagaaaatccat 30046713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 8035974 - 8035800
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||| |||     || |||||||||| |  |||||||||||||||||||||||||||    
T  8035974 acaaaagagggcaaagctcaaagaaaaagaaaactaagaaattaaactgacgtttctaggcatgcaagccccggaaatatcatcaaacaaaagactctga 8035875  T
Q  224 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||| | |||||| |||||||  |||||||||||||||||||||||| ||| | || ||||||||||| ||||||    
T  8035874 agctaactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatct 8035800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 154 - 297
Target Start/End: Original strand, 38110543 - 38110692
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || |||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  38110543 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaggtggagtctccagaa 38110642  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||| | ||| | || ||||||||||| ||||||    
T  38110643 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatct 38110692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 45033540 - 45033705
Alignment:
Q  147 caaagaaaaagaaaactaagaaattaaacgga-----ctaagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtc 240  Q
    ||||||||||||||||||| ||||||||||||     ||  ||||| ||||||  ||||||||||||||||||||||||||||  ||| |||||| ||||    
T  45033540 caaagaaaaagaaaactaaaaaattaaacggatgttcctgggcatgtaagctccggaaatatcatcaaacaaaagactctgaaattcattagggggagtc 45033639  T
Q  241 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatctccacctatg 306  Q
    |||  |||||||||||||||||||||||| ||| | || ||||||||||| |||||| ||| ||||    
T  45033640 tccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttatg 45033705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 46046145 - 46045996
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     ||  ||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  46046145 aaagaaaactaagaaattaaacggacgttcctagacatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 46046046  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||| | ||| | || ||||||||||| ||||||    
T  46046045 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatct 46045996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 5791323 - 5791446
Alignment:
Q  148 aaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtag-gggagtct 241  Q
    ||||| ||||||||||||||||||||||||||     ||  ||||||||| |   |||||||||||||||||||||||||||||||| ||| ||||||||    
T  5791323 aaagagaaagaaaactaagaaattaaacggacgttcttagacatgcaagccccgaaaatatcatcaaacaaaagactctgaagctcactagagggagtct 5791422  T
Q  242 ccgaaatatgaaaatctagaaaat 265  Q
    ||| ||||||||||||||||||||    
T  5791423 ccggaatatgaaaatctagaaaat 5791446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 5350255 - 5350083
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| |||||||  |||||||||||||||||||| ||||||||||||     || |||| ||||  || |||||||||||||||||||||||||||    
T  5350255 acaaaagagggcaaagcccaaagaaaaagaaaactaaggaattaaacggacgttcctaggcatacaagtcctggaaatatcatcaaacaaaagactctga 5350156  T
Q  224 agctcagta-ggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||| || ||||||||||   ||||||  ||| |||||||||||| ||| | || ||||||||||| ||||||    
T  5350155 agctcactagggggagtctctagaatatg--aatatagaaaatccatcgaaatgctgaaattagcaagccaatct 5350083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 2037608 - 2037685
Alignment:
Q  197 gaaatatcatcaaacaaaagactctgaagctcagtaggg-gagtctccgaaatatgaaaatctagaaaatccattgaa 273  Q
    |||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||||||| |||||| ||||||    
T  2037608 gaaatatcatcaaacaaatgactctgaagttcattagggagagtctccaaaatatgaaaatctaaaaaatctattgaa 2037685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 3782614 - 3782444
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| ||||||||| ||||| ||||||||||||||||||||||| ||     || ||||| ||  ||||||||||| |||||||  ||||||||||    
T  3782614 acaaaagagggcaaagtttaaagagaaagaaaactaagaaattaaacgaacgtttttaggcatgtaaattctagaaatattatcaaacgtaagactctga 3782515  T
Q  224 agctcagtaggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    || ||| ||||    |||||  ||||||||||| || ||||| ||| ||| | || ||||||||||||||||||    
T  3782514 agttcattagg---atctccagaatatgaaaatttaaaaaattcatcgaaatgctgaaattagcaagtcaatct 3782444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 7431729 - 7431827
Alignment:
Q  198 aaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 295  Q
    ||||||||||||| | || ||||||||||||| |||| ||| |||||  ||||| |||||||| | ||||||||||| |  | ||||||||||| ||||    
T  7431729 aaatatcatcaaatacaacactctgaagctcattaggaggattctccagaatataaaaatctaaagaatccattgaaatgttgaaattagcaagccaat 7431827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 45093704 - 45093530
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||||||     || |||||||||| |  |||||||||||||||||||||||||||    
T  45093704 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctga 45093605  T
Q  224 agctcagta-ggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||| || ||||||||| |  |||||||||||||||||||||||| ||| | || ||||| ||||| ||||||    
T  45093604 agctcactagggggagtcttcagaatatgaaaatctagaaaatccatcgaaatgctgaaatttgcaagccaatct 45093530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 289
Target Start/End: Complemental strand, 33373436 - 33373295
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || ||||||||||||  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  33373436 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 33373337  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaa 289  Q
    |||||||||||||||||||| | ||| | || ||||||||||    
T  33373336 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaa 33373295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 147 - 297
Target Start/End: Complemental strand, 42000520 - 42000364
Alignment:
Q  147 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtaggg-gagtc 240  Q
    |||||||||||||||||||||||||||||| ||     || |||||||||| |  ||||||||||||||||||||||| ||||||||| ||||| |||||    
T  42000520 caaagaaaaagaaaactaagaaattaaacgaacattcctatgcatgcaagccccggaaatatcatcaaacaaaagactttgaagctcactagggagagtc 42000421  T
Q  241 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||  |||||||||||||||||| ||||| ||| | || ||||||||||| ||||||    
T  42000420 tccagaatatgaaaatctagaaattccatcgaaatgctgaaattagcaagccaatct 42000364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 35808447 - 35808319
Alignment:
Q  147 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagta-ggggagtc 240  Q
    |||||| ||||||||||||||||||||| ||||     || |||||||||| |  ||||||| ||||||||||||||||||||||||| || ||||| ||    
T  35808447 caaagagaaagaaaactaagaaattaaaaggacgttcctaggcatgcaagccccggaaatataatcaaacaaaagactctgaagctcactagggggattc 35808348  T
Q  241 tccgaaatatgaaaatctagaaaatccat 269  Q
    |||  |||||||| ||||||| |||||||    
T  35808347 tccataatatgaagatctagagaatccat 35808319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 31512243 - 31512378
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaag-ctctagaaatatcatcaaacaaaagactctg 222  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||||||     || | ||||||| | | | |||||||||||||||||||| ||||    
T  31512243 acaaaagagggcaaagttcaaagaaaaagaaaattaagaaattaaacggacgttcttaggtatgcaagccccgaaaaatatcatcaaacaaaagattctg 31512342  T
Q  223 aagctcagta-ggggagtctccgaaatatgaaaatc 257  Q
    ||||||| || ||||||||| |  ||||||||||||    
T  31512343 aagctcactagggggagtcttcagaatatgaaaatc 31512378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 9216475 - 9216314
Alignment:
Q  141 aaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagta-gg 234  Q
    |||||| ||||| |||||||||||| |||||||||||||     || ||||| |||  |   |||||||| ||||||||| ||||||||||||| || ||    
T  9216475 aaagtttaaagagaaagaaaactaataaattaaacggacgttcctatgcatgtaagtcccgaaaatatcaacaaacaaaaaactctgaagctcactaggg 9216376  T
Q  235 ggagtctccga-aatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 295  Q
    ||||||||| | |||||||||||||| ||||||||| ||||| || ||||||| ||| ||||    
T  9216375 ggagtctccaagaatatgaaaatctaaaaaatccatcgaagtgctgaaattaggaagccaat 9216314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 14342862 - 14342958
Alignment:
Q  198 aaatatcatcaaacaaaagactctgaagctcagtaggg-gagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaa 294  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||| |  |||||||||||||||||||| ||||||| |  | |||||| ||||||||    
T  14342862 aaatatcatcaaacaaa-gactctgaagctcattagggagagtcttcagaatatgaaaatctagaaaattcattgaaatgttgaaattaccaagtcaa 14342958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 6294254 - 6294105
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  6294254 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 6294155  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||| | ||| | || ||||||||||| ||||||    
T  6294154 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatct 6294105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 16855208 - 16855034
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||||||     |   ||||||||| |   |||||| |||||||||||||||||||    
T  16855208 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttccttgacatgcaagccccgaaaatattatcaaacaaaagactctga 16855109  T
Q  224 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||| |||||| ||||| |  |||||||||||||||||||||||||||| | || ||||||||||| ||||||    
T  16855108 agctcactagggggagtcttcagaatatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatct 16855034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 38168207 - 38168317
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  38168207 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 38168306  T
Q  248 tatgaaaatct 258  Q
    |||||||||||    
T  38168307 tatgaaaatct 38168317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 5556204 - 5556081
Alignment:
Q  184 catgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtag-gggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaa 282  Q
    ||||||||| |||||||||||||||||||||||| || |||||||| ||| |||||||||   |||||||||||||| |||||| || ||| | || |||    
T  5556204 catgcaagccctagaaatatcatcaaacaaaagaatcagaagctcattagagggagtctctagaatatgaaaatctaaaaaatctatcgaaatgctgaaa 5556105  T
Q  283 ttagcaagtcaatctccacctatg 306  Q
    ||||||||||| ||| ||| ||||    
T  5556104 ttagcaagtcattctgcacttatg 5556081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 295
Target Start/End: Complemental strand, 28706243 - 28706083
Alignment:
Q  140 caaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg 234  Q
    |||||| |||||| | |||||||||| |||||||||||||     || ||||||| || |  ||||||||||||||||||||||| ||||||| | ||||    
T  28706243 caaagtccaaagagatagaaaactaaaaaattaaacggacgttcctaggcatgcaggcccc-gaaatatcatcaaacaaaagactatgaagcttactagg 28706145  T
Q  235 gg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 295  Q
    || | ||||| ||||||||||||||| ||||||||| ||| | || ||||||||||| ||||    
T  28706144 ggtattctccaaaatatgaaaatctaaaaaatccatcgaaatgctgaaattagcaagccaat 28706083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 39476298 - 39476149
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaa 247  Q
    |||||||| |||||||||||||||||     || ||||||||| |  ||||||||| |||||||||||| | ||||| ||| |||||| ||||| |   |    
T  39476298 aaagaaaagtaagaaattaaacggacgttcctaggcatgcaagtttcagaaatatcgtcaaacaaaagattttgaagttcactagggggagtcttcagga 39476199  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||||| ||| | || ||||||||||| ||||||    
T  39476198 tatgaaaatctagaaaatccatcgaaatgctgaaattagcaagacaatct 39476149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 129 - 297
Target Start/End: Complemental strand, 44307787 - 44307613
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctga 223  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||| ||     || |||||||||| |    ||||||||||| |||||||||||||    
T  44307787 acaaaagagggcaaagcacaaagaaaaagaaaactaagaaattaaacgaacgttcctaggcatgcaagccccgataatatcatcaaccaaaagactctga 44307688  T
Q  224 agctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||| |||||| |||||||  |||||||||||||||||||||||| ||| | || ||||||||||| ||||||    
T  44307687 agctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatct 44307613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 1217397 - 1217248
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || |||||||||| |  ||||||||||||||||||||||||||||||||| |||| |||||||||  ||    
T  1217397 aaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaa 1217298  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||| ||||||| | ||| | || ||||||||||| ||||||    
T  1217297 tatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatct 1217248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 1369672 - 1369523
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||| ||||     || ||||||||| ||  ||||||||||||||||||||||||||||||||| |||| ||||||||   ||    
T  1369672 aaagaaaactaagaaattaaatggacgttcctaggcatgcaagttccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctcaagaa 1369573  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||||||||||| | ||| | || ||||||||||| ||||||    
T  1369572 tatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatct 1369523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 36858670 - 36858824
Alignment:
Q  147 caaagaaaaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagta-ggggagtc 240  Q
    |||||| ||||||||||||||||||||| ||||     || |||||||||  |  ||||||||||||||||||||||||||||||||| || ||||| ||    
T  36858670 caaagagaaagaaaactaagaaattaaaaggacgttcctacgcatgcaagtcccggaaatatcatcaaacaaaagactctgaagctcactagggggattc 36858769  T
Q  241 tccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 295  Q
    |||  |||||||| ||||||| ||||||| ||| | ||  |||||| ||||||||    
T  36858770 tccagaatatgaagatctagagaatccatcgaaatgctgtaattagtaagtcaat 36858824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 297
Target Start/End: Original strand, 28945237 - 28945386
Alignment:
Q  154 aaagaaaactaagaaattaaacggac-----taagcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagg-ggagtctccgaaa 247  Q
    ||||||||||||||||||||||||||     || ||||| |||  |   |||||||||||||||||||||| ||||||||| |||| ||||||||   ||    
T  28945237 aaagaaaactaagaaattaaacggacgttcctaggcatgtaagtcccgaaaatatcatcaaacaaaagactttgaagctcactaggaggagtctctagaa 28945336  T
Q  248 tatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatct 297  Q
    |||||||||||| ||||||| | ||| | || ||||||||||| ||||||    
T  28945337 tatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatct 28945386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 25906001 - 25905900
Alignment:
Q  197 gaaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaat 295  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||   |||||| ||||||||||||||||||||| | || ||||||||||||||||    
T  25906001 gaaatatcatcaaacaaaagactctgaagctcactagggggagtctcaagaatatgtaaatctagaaaatccattgaaatgctgaaattagcaagtcaat 25905902  T
Q  296 ct 297  Q
    ||    
T  25905901 ct 25905900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 37503278 - 37503178
Alignment:
Q  198 aaatatcatcaaacaaaagactctgaagctcagtagggg-agtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaatc 296  Q
    ||||||||||||||| | |||||||||||||| |||||| | ||||   |||||||||||||||| ||||||| ||| | ||||||||||||||||||||    
T  37503278 aaatatcatcaaacacaggactctgaagctcactagggggattctctagaatatgaaaatctagagaatccatcgaaatgctaaaattagcaagtcaatc 37503179  T
Q  297 t 297  Q
    |    
T  37503178 t 37503178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 3461499 - 3461591
Alignment:
Q  198 aaatatcatcaaacaaaagactctgaagctcagta-ggggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaa 289  Q
    |||||||||||||||||||||||||||| ||| || ||||| |||||  ||||||||||||||||||||| |||||  | || ||||||||||    
T  3461499 aaatatcatcaaacaaaagactctgaagttcattagggggattctccagaatatgaaaatctagaaaatctattgatatgctcaaattagcaa 3461591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 1182708 - 1182622
Alignment:
Q  183 gcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtag-gggagtctccgaaatatgaaaatctagaaaatcca 268  Q
    |||||||||| | | |||||||||||||||||| |||| |||||||| ||| |||||||||| ||||||||| ||||| ||||||||    
T  1182708 gcatgcaagccccaaaaatatcatcaaacaaaatactcagaagctcactagagggagtctccaaaatatgaatatctataaaatcca 1182622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 43329071 - 43329124
Alignment:
Q  183 gcatgcaagctctagaaatatcatcaaacaaaagactctgaagctcagtagggg 236  Q
    |||||||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  43329071 gcatgcaagctccaaaaatatcatcaaacaaaagactctgaagctcactagggg 43329124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 294
Target Start/End: Original strand, 30775560 - 30775723
Alignment:
Q  139 gcaaagttcaaaga-aaaagaaaactaagaaattaaacgga-----ctaagcatgcaagctc-tagaaatatcatcaaacaaaagactctgaagctcagt 231  Q
    |||||| ||||||| ||||||||||||||||||||||||||     |||  ||| ||||||| |||||||| | |||||||||||||| ||||| ||| |    
T  30775560 gcaaagctcaaagagaaaagaaaactaagaaattaaacggatgttcctagacatacaagctcctagaaataccgtcaaacaaaagactttgaagttcact 30775659  T
Q  232 agg-ggagtctccgaaatatgaaaatctagaaaatccattgaagtactaaaattagcaagtcaa 294  Q
    | | ||||||| |   ||||||||||||| |||||||||  || | || |||||||||||||||    
T  30775660 aagaggagtctacatgatatgaaaatctaaaaaatccatcaaaatgcttaaattagcaagtcaa 30775723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 43329173 - 43329125
Alignment:
Q  129 acaagagaaggcaaagttcaaagaaaaagaaaactaagaaattaaacgg 177  Q
    |||| ||| |||||||  |||||||||||||||||||||||||||||||    
T  43329173 acaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacgg 43329125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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