View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2317_low_14 (Length: 277)

Name: NF2317_low_14
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2317_low_14
NF2317_low_14
[»] chr7 (36 HSPs)
chr7 (16-153)||(5932488-5932625)
chr7 (167-277)||(5932702-5932811)
chr7 (169-224)||(11206377-11206432)
chr7 (173-224)||(8768982-8769033)
chr7 (173-224)||(10671833-10671884)
chr7 (173-224)||(13852321-13852372)
chr7 (169-224)||(31983015-31983070)
chr7 (173-224)||(47069681-47069732)
chr7 (173-224)||(47204476-47204527)
chr7 (173-224)||(47903260-47903311)
chr7 (232-277)||(32823719-32823764)
chr7 (232-277)||(43429290-43429335)
chr7 (232-276)||(10069327-10069371)
chr7 (173-224)||(3213241-3213292)
chr7 (177-224)||(7209288-7209335)
chr7 (173-224)||(12117612-12117663)
chr7 (169-224)||(24361513-24361568)
chr7 (173-224)||(27054751-27054802)
chr7 (232-277)||(1335439-1335484)
chr7 (232-277)||(24361209-24361254)
chr7 (232-277)||(24361415-24361460)
chr7 (232-277)||(27054652-27054697)
chr7 (232-277)||(31876557-31876602)
chr7 (232-277)||(31982915-31982960)
chr7 (233-277)||(22366573-22366617)
chr7 (176-224)||(43429191-43429239)
chr7 (169-224)||(10069202-10069257)
chr7 (178-224)||(1335335-1335381)
chr7 (173-223)||(32823617-32823666)
chr7 (24-76)||(1521380-1521435)
chr7 (232-277)||(7760226-7760271)
chr7 (232-277)||(18673112-18673157)
chr7 (185-224)||(36507971-36508010)
chr7 (232-277)||(13852430-13852475)
chr7 (173-222)||(31876651-31876700)
chr7 (232-277)||(47903356-47903401)
[»] chr8 (22 HSPs)
chr8 (173-224)||(36910350-36910401)
chr8 (173-223)||(33068278-33068328)
chr8 (169-218)||(6200878-6200927)
chr8 (173-224)||(3006591-3006642)
chr8 (173-224)||(5803265-5803316)
chr8 (173-224)||(10661166-10661217)
chr8 (169-224)||(44672797-44672852)
chr8 (232-277)||(14549349-14549394)
chr8 (232-277)||(30392202-30392247)
chr8 (169-224)||(14549232-14549287)
chr8 (232-277)||(6200763-6200808)
chr8 (232-277)||(10661270-10661315)
chr8 (232-277)||(36827708-36827753)
chr8 (232-277)||(36910252-36910297)
chr8 (232-277)||(44672905-44672950)
chr8 (233-277)||(3682042-3682086)
chr8 (233-277)||(18169939-18169983)
chr8 (233-277)||(18633505-18633549)
chr8 (169-207)||(28073227-28073265)
chr8 (232-273)||(33068379-33068420)
chr8 (184-224)||(18170044-18170084)
chr8 (184-224)||(18633612-18633652)
[»] chr5 (37 HSPs)
chr5 (169-224)||(36103630-36103685)
chr5 (169-224)||(667633-667688)
chr5 (173-224)||(11917418-11917469)
chr5 (173-224)||(27886435-27886486)
chr5 (173-224)||(38433710-38433761)
chr5 (232-277)||(2226799-2226844)
chr5 (232-277)||(9988772-9988817)
chr5 (232-277)||(10174194-10174239)
chr5 (232-277)||(12680991-12681036)
chr5 (232-277)||(32521136-32521181)
chr5 (232-277)||(36103527-36103572)
chr5 (232-277)||(36177016-36177061)
chr5 (232-277)||(38433820-38433865)
chr5 (232-277)||(42544775-42544820)
chr5 (173-224)||(12166183-12166234)
chr5 (173-224)||(15068473-15068524)
chr5 (173-224)||(30002024-30002075)
chr5 (169-224)||(30265810-30265865)
chr5 (173-224)||(35358949-35359000)
chr5 (173-224)||(36177124-36177175)
chr5 (60-131)||(38008795-38008866)
chr5 (173-224)||(42544671-42544722)
chr5 (174-224)||(8409004-8409054)
chr5 (178-224)||(9161001-9161047)
chr5 (232-277)||(333199-333244)
chr5 (232-277)||(9161104-9161149)
chr5 (232-277)||(35359058-35359103)
chr5 (169-224)||(701228-701284)
chr5 (233-277)||(30265710-30265754)
chr5 (173-224)||(17085256-17085307)
chr5 (178-224)||(2226903-2226949)
chr5 (178-224)||(32521241-32521287)
chr5 (232-277)||(12166084-12166129)
chr5 (184-224)||(333296-333336)
chr5 (184-224)||(12681088-12681128)
chr5 (173-224)||(10174098-10174149)
chr5 (184-224)||(9988879-9988919)
[»] chr4 (33 HSPs)
chr4 (173-224)||(40900102-40900153)
chr4 (173-224)||(5261983-5262034)
chr4 (169-224)||(23937537-23937592)
chr4 (173-224)||(29644144-29644195)
chr4 (173-224)||(30193994-30194045)
chr4 (173-224)||(50570977-50571028)
chr4 (174-224)||(36077586-36077636)
chr4 (173-223)||(42557737-42557787)
chr4 (232-277)||(10218805-10218850)
chr4 (232-277)||(23937438-23937483)
chr4 (232-277)||(30193896-30193941)
chr4 (173-224)||(29636786-29636837)
chr4 (232-277)||(40900000-40900045)
chr4 (232-276)||(5261887-5261931)
chr4 (233-277)||(6333439-6333483)
chr4 (237-277)||(31301366-31301406)
chr4 (232-275)||(8176520-8176563)
chr4 (173-224)||(40806837-40806888)
chr4 (169-224)||(43630586-43630641)
chr4 (173-224)||(48996097-48996148)
chr4 (232-277)||(32136814-32136859)
chr4 (232-277)||(40806733-40806778)
chr4 (232-277)||(48996201-48996246)
chr4 (232-277)||(51394835-51394880)
chr4 (60-131)||(4233751-4233822)
chr4 (173-224)||(10218691-10218742)
chr4 (173-224)||(32136705-32136756)
chr4 (232-271)||(52344849-52344888)
chr4 (169-207)||(14866785-14866823)
chr4 (184-224)||(6333335-6333375)
chr4 (184-224)||(8176616-8176656)
chr4 (233-277)||(43630695-43630739)
chr4 (184-224)||(52344756-52344796)
[»] chr3 (22 HSPs)
chr3 (169-224)||(35402224-35402279)
chr3 (173-224)||(6004406-6004457)
chr3 (175-224)||(33360968-33361017)
chr3 (169-222)||(39097957-39098010)
chr3 (173-224)||(4669666-4669717)
chr3 (169-224)||(10369220-10369275)
chr3 (173-224)||(21586862-21586913)
chr3 (173-224)||(34794607-34794658)
chr3 (173-224)||(51149676-51149727)
chr3 (232-277)||(6004309-6004354)
chr3 (233-277)||(9827701-9827745)
chr3 (174-224)||(43030430-43030480)
chr3 (233-277)||(21586762-21586807)
chr3 (232-277)||(32880418-32880463)
chr3 (232-277)||(35532073-35532118)
chr3 (232-272)||(50562496-50562536)
chr3 (185-224)||(9827797-9827836)
chr3 (185-224)||(32880325-32880364)
chr3 (236-275)||(33002643-33002682)
chr3 (173-224)||(48032868-48032918)
chr3 (236-277)||(27642084-27642125)
chr3 (232-277)||(43030547-43030592)
[»] chr2 (19 HSPs)
chr2 (169-224)||(9811399-9811454)
chr2 (169-222)||(17916872-17916925)
chr2 (169-224)||(11375910-11375965)
chr2 (173-224)||(36413659-36413710)
chr2 (173-224)||(44035319-44035370)
chr2 (173-224)||(44979788-44979839)
chr2 (232-277)||(18357021-18357066)
chr2 (232-277)||(19937036-19937081)
chr2 (173-224)||(16578648-16578699)
chr2 (169-224)||(25298270-25298325)
chr2 (232-277)||(25298172-25298217)
chr2 (232-277)||(44979691-44979736)
chr2 (233-277)||(34910431-34910475)
chr2 (232-272)||(44035431-44035471)
chr2 (232-277)||(11376018-11376063)
chr2 (232-277)||(17916776-17916821)
chr2 (232-277)||(42785545-42785590)
chr2 (169-224)||(19937144-19937198)
chr2 (174-224)||(42785648-42785698)
[»] chr1 (27 HSPs)
chr1 (169-224)||(20493757-20493812)
chr1 (173-224)||(39256655-39256706)
chr1 (173-224)||(8211291-8211342)
chr1 (173-224)||(32954050-32954101)
chr1 (173-224)||(33474460-33474511)
chr1 (169-224)||(45691806-45691861)
chr1 (232-277)||(24910969-24911014)
chr1 (232-277)||(44918663-44918708)
chr1 (232-277)||(51252336-51252381)
chr1 (233-277)||(33474564-33474608)
chr1 (183-223)||(42789628-42789668)
chr1 (173-224)||(5155362-5155413)
chr1 (232-277)||(1161664-1161709)
chr1 (232-277)||(45691918-45691963)
chr1 (173-224)||(1161761-1161812)
chr1 (173-224)||(16529519-16529570)
chr1 (232-274)||(39256555-39256597)
chr1 (173-223)||(51252435-51252485)
chr1 (232-277)||(11899135-11899180)
chr1 (236-277)||(16529410-16529451)
chr1 (232-277)||(32954170-32954214)
chr1 (232-277)||(33910692-33910737)
chr1 (184-224)||(11899029-11899069)
chr1 (233-277)||(42789530-42789574)
chr1 (184-224)||(44918566-44918606)
chr1 (173-224)||(29389045-29389096)
chr1 (232-277)||(29389154-29389199)
[»] scaffold0308 (1 HSPs)
scaffold0308 (173-224)||(5902-5953)
[»] chr6 (21 HSPs)
chr6 (173-224)||(5874171-5874222)
chr6 (173-224)||(12270569-12270620)
chr6 (177-224)||(13802001-13802048)
chr6 (177-224)||(13810888-13810935)
chr6 (169-224)||(33550328-33550383)
chr6 (232-277)||(10390942-10390987)
chr6 (173-224)||(10590863-10590914)
chr6 (170-224)||(5287923-5287977)
chr6 (232-277)||(13801893-13801938)
chr6 (232-277)||(15859850-15859895)
chr6 (232-277)||(33550445-33550490)
chr6 (173-222)||(35040231-35040280)
chr6 (173-224)||(15859738-15859789)
chr6 (232-277)||(35040137-35040182)
chr6 (233-277)||(5287824-5287868)
chr6 (234-277)||(10494291-10494334)
chr6 (185-224)||(10494400-10494439)
chr6 (173-224)||(25136784-25136835)
chr6 (232-277)||(10590970-10591016)
chr6 (236-277)||(25136897-25136938)
chr6 (173-224)||(10391040-10391092)
[»] scaffold0013 (4 HSPs)
scaffold0013 (232-277)||(106156-106201)
scaffold0013 (232-277)||(128763-128808)
scaffold0013 (173-220)||(128649-128696)
scaffold0013 (173-220)||(106042-106089)
[»] scaffold0059 (2 HSPs)
scaffold0059 (173-224)||(69559-69610)
scaffold0059 (232-277)||(69451-69496)
[»] scaffold0029 (2 HSPs)
scaffold0029 (178-224)||(40594-40640)
scaffold0029 (232-277)||(40491-40536)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 5932488 - 5932625
Alignment:
Q  16 atgaaatgaatggttgacaaaatcaaaaggcaataaacaaatccaatattaaaccaacaatgaagccgttacaaaacatactctcctatatatttctcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5932488 atgaaatgaatggttgacaaaatcaaaaggcaataaacaaatccaatattaaaccaacaatgaagccgttacaaaacatactctcctatatatttctcat 5932587  T
Q  116 ttcattggagttcattgatctacccgtaattcttttga 153  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5932588 ttcattggagttcattgatctacccgtaattcttttga 5932625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 167 - 277
Target Start/End: Original strand, 5932702 - 5932811
Alignment:
Q  167 agaaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaacnnnnnnntattacattaactctaatattgctaacttgttaca 266  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||    
T  5932702 agaaagcatgcggtttggtttggttaagttgatttttaaaaagtcatccaaaccaaac-aaaaaatattacattaactctaatattgccaacttgttaca 5932800  T
Q  267 aaataaacata 277  Q
    |||||||||||    
T  5932801 aaataaacata 5932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 11206432 - 11206377
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  11206432 aaaacatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 11206377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 8769033 - 8768982
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  8769033 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 8768982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10671833 - 10671884
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  10671833 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 10671884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 13852321 - 13852372
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  13852321 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 13852372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 31983070 - 31983015
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  31983070 aaaatatgcagtttggtttggttcagttgatttttaaaaagtcatccaaaccaaac 31983015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 47069681 - 47069732
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  47069681 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 47069732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 47204527 - 47204476
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  47204527 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 47204476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 47903260 - 47903311
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  47903260 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 47903311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 32823719 - 32823764
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  32823719 tattacattaactctaatattgccaacttgttacaaaataaacata 32823764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 43429290 - 43429335
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  43429290 tattacattaactctaatattgccaacttgttacaaaataaacata 43429335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 10069327 - 10069371
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacat 276  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  10069327 tattacattaactctaatattgccaacttgttacaaaataaacat 10069371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 3213292 - 3213241
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  3213292 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaatcaaac 3213241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 7209335 - 7209288
Alignment:
Q  177 cggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  7209335 cggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 7209288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 12117612 - 12117663
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||||||    
T  12117612 catgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 12117663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 24361568 - 24361513
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  24361568 aaaacatgtggtttggtttggttcagttgattttaaaaaaatcatccaaaccaaac 24361513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 27054802 - 27054751
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  27054802 catgcggtttggtttggttcggttgatttttaaaaagccatccaaaccaaac 27054751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 1335439 - 1335484
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  1335439 tattacattaactctaatattgccaacttattacaaaataaacata 1335484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 24361254 - 24361209
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  24361254 tattacattaactctaatattgtcaacttgttacaaaataaacata 24361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 24361460 - 24361415
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  24361460 tattacattaactctaatattgtcaacttgttacaaaataaacata 24361415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 27054697 - 27054652
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||    
T  27054697 tattacattaactctaatatttccaacttgttacaaaataaacata 27054652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 31876602 - 31876557
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  31876602 tattacattaactctaatattgccaacttgttacaaaataatcata 31876557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 31982960 - 31982915
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  31982960 tattacattaactctaatattgccaacttattacaaaataaacata 31982915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 22366573 - 22366617
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  22366573 attacattaactctaatattgccaatttgttacaaaataaacata 22366617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 43429191 - 43429239
Alignment:
Q  176 gcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  43429191 gcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaac 43429239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 10069202 - 10069257
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| |||| ||||| ||| |||||||||||||||||||| ||||||||||    
T  10069202 aaaacatgctgtttggtttgattcggttgatttttaaaaagtcattcaaaccaaac 10069257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 1335335 - 1335381
Alignment:
Q  178 ggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  1335335 ggtttggtttggttcggttgatttttaaaaagtcctccaaaccaaac 1335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 32823617 - 32823666
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaa 223  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  32823617 catgcggtttggtt-ggttcggttgatttttaaaaagtcatccaaaccaaa 32823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 1521435 - 1521380
Alignment:
Q  24 aatggttgacaaaatcaaaaggcaataaacaaatcca---atattaaaccaacaat 76  Q
    |||||||||||||||||||| |||||||||||||| |   ||||||||||||||||    
T  1521435 aatggttgacaaaatcaaaaagcaataaacaaatcaaattatattaaaccaacaat 1521380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 7760226 - 7760271
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||    
T  7760226 tatttcattaactctaatattgccgacttgttacaaaataaacata 7760271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 18673157 - 18673112
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||    
T  18673157 tattacattaactctaatattgacaacttgttccaaaataaacata 18673112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 36507971 - 36508010
Alignment:
Q  185 tttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  36507971 tttgattcggttgatttttaaaaagtcatccaaaccaaac 36508010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 13852430 - 13852475
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||| |||||||  |||||| |||||||||||||||    
T  13852430 tattacattaactccaatattgtcaacttggtacaaaataaacata 13852475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 31876700 - 31876651
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaa 222  Q
    ||||| |||| ||| ||||| |||||||||||||||||||| ||||||||    
T  31876700 catgcagtttggttcggttcggttgatttttaaaaagtcattcaaaccaa 31876651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 47903356 - 47903401
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||| |||||||||||||||| |  |||||||||||||||||||    
T  47903356 tattactttaactctaatattgccaggttgttacaaaataaacata 47903401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 36910401 - 36910350
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36910401 catgcggtttagtttggttcggttgatttttaaaaagtcatccaaaccaaac 36910350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 33068278 - 33068328
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaa 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33068278 catgcggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaa 33068328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 6200927 - 6200878
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaa 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6200927 aaaacatgcggtttagtttggttaagttgatttttaaaaagtcatccaaa 6200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 3006642 - 3006591
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  3006642 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 3006591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 5803316 - 5803265
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5803316 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 5803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10661166 - 10661217
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  10661166 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 10661217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 44672797 - 44672852
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  44672797 aaaacatgcggtttggtttggttcgattgatttttaaaaagtcatccaaaccaaac 44672852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 14549349 - 14549394
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  14549349 tattacattaactctaatattgccaacttgttacaaaataaacata 14549394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 30392202 - 30392247
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  30392202 tattacattaactctaatattgccaacttgttacaaaataaacata 30392247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 14549232 - 14549287
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  14549232 aaaatatgcggtttggtttgattcggttgatttttaaaaagtcatccaaaccaaac 14549287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 6200808 - 6200763
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  6200808 tattacattaactctaatattgccaacttgtttcaaaataaacata 6200763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 10661270 - 10661315
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  10661270 tattacattaactgtaatattgccaacttgttacaaaataaacata 10661315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 36827753 - 36827708
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  36827753 tattacattaactctaatattgccaacttgctacaaaataaacata 36827708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 36910297 - 36910252
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||    
T  36910297 tattacattaactctaatattgccaacttgttacaaaatagacata 36910252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 44672905 - 44672950
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  44672905 tattacattaactctaatattgccaacttgttgcaaaataaacata 44672950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 3682042 - 3682086
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||    
T  3682042 attacattaactttaatattgtcaacttgttacaaaataaacata 3682086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 18169983 - 18169939
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||    
T  18169983 attacattaactctaatgttgcctacttgttacaaaataaacata 18169939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 18633549 - 18633505
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||| ||||  |||||||||||||||||||||    
T  18633549 attacattaactctaatgttgcctacttgttacaaaataaacata 18633505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 28073265 - 28073227
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaa 207  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  28073265 aaaacatgtggtttagtttggttcagttgacttttaaaa 28073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 33068379 - 33068420
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaa 273  Q
    ||||||||||||||||||||||| ||||| |||||| |||||    
T  33068379 tattacattaactctaatattgccaacttattacaagataaa 33068420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 18170084 - 18170044
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| ||||| ||||||||||||||| |||||||||    
T  18170084 gtttggttcggttgagttttaaaaagtcatcaaaaccaaac 18170044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 18633652 - 18633612
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| ||||| ||||||||||||||| |||||||||    
T  18633652 gtttggttcggttgagttttaaaaagtcatcaaaaccaaac 18633612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 36103685 - 36103630
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36103685 aaaatatgcggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaac 36103630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 667688 - 667633
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  667688 aaaacatacggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 667633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 11917418 - 11917469
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  11917418 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 11917469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 27886486 - 27886435
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  27886486 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 27886435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 38433710 - 38433761
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  38433710 catgcggtttagtttggttcggttgatttttaaaaagtcctccaaaccaaac 38433761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 2226844 - 2226799
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2226844 tattacattaactctaatattgccaacttgttacaaaataaacata 2226799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 9988817 - 9988772
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  9988817 tattacattaactctaatattgccaacttgttacaaaataaacata 9988772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 10174194 - 10174239
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10174194 tattacattaactctaatattgccaacttgttacaaaataaacata 10174239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 12681036 - 12680991
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  12681036 tattacattaactctaatattgccaacttgttacaaaataaacata 12680991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 32521181 - 32521136
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  32521181 tattacattaactctaatattgccaacttgttacaaaataaacata 32521136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 36103572 - 36103527
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  36103572 tattacattaactctaatattgccaacttgttacaaaataaacata 36103527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 36177061 - 36177016
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  36177061 tattacattaactctaatattgccaacttgttacaaaataaacata 36177016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 38433820 - 38433865
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  38433820 tattacattaactctaatattgccaacttgttacaaaataaacata 38433865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 42544775 - 42544820
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  42544775 tattacattaactctaatattgccaacttgttacaaaataaacata 42544820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 12166234 - 12166183
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||||||    
T  12166234 catgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 12166183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 15068473 - 15068524
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  15068473 catgcgatttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 15068524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 30002024 - 30002075
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  30002024 catgcggtttggtttggttcggttgttttttaaaaagtcatccaaaccaaac 30002075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 30265865 - 30265810
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  30265865 aaaacatgcagtttggtttggttcggttgatttttaaaaagtcatcaaaaccaaac 30265810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 35358949 - 35359000
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  35358949 catgcggtttggtttggttcggttgatatttaaaaagtcatccaaaccaaac 35359000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 36177175 - 36177124
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  36177175 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaac 36177124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 38008795 - 38008866
Alignment:
Q  60 aatattaaaccaacaatgaagccgttacaaaacatactctcctatatatttctcatttcattggagttcatt 131  Q
    ||||||||||||||||||||||  || |||||||||  |||||||||||| |||||||||||| | ||||||    
T  38008795 aatattaaaccaacaatgaagctatttcaaaacataacctcctatatattcctcatttcattgcaattcatt 38008866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 42544671 - 42544722
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  42544671 catgcggtttggtttggttcggttgatttttaagaagtcatccaaaccaaac 42544722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 8409004 - 8409054
Alignment:
Q  174 atgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  8409004 atgcggtttggtttggttcggttgatttttaaaaagtcacccaaaccaaac 8409054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 9161001 - 9161047
Alignment:
Q  178 ggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9161001 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 9161047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 333244 - 333199
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  333244 tattacattaactctaatattgtcaacttgttacaaaataaacata 333199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 9161104 - 9161149
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  9161104 tattacattaactctaatattgccaacttgtcacaaaataaacata 9161149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 35359058 - 35359103
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  35359058 tattacattaactctaatattgccaacttgttacaacataaacata 35359103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 701228 - 701284
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttt-taaaaagtcatccaaaccaaac 224  Q
    |||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  701228 aaaacatgtggtttggtttggttcggttgattttttaaaaagtcatccaaaccaaac 701284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 30265754 - 30265710
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  30265754 attacattaactctaatattgccaacttattacaaaataaacata 30265710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 17085307 - 17085256
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||||||||||||| |||||||||||||||||||||| || |||||    
T  17085307 catgcgatttagtttggttcggttgatttttaaaaagtcatcccaatcaaac 17085256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 2226949 - 2226903
Alignment:
Q  178 ggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  2226949 ggtttggtttggttcggttgatttttaaaaactcatccaaaccaaac 2226903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 32521287 - 32521241
Alignment:
Q  178 ggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||    
T  32521287 ggtttaatttggttcggttgatttttaaaaattcatccaaaccaaac 32521241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 12166129 - 12166084
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||    
T  12166129 tattacattaactctaacattgtcaacttgttacaaaataaacata 12166084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 333336 - 333296
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  333336 gtttggttcgattgatttttaaaaagtcatccaaaccaaac 333296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 12681128 - 12681088
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  12681128 gtttggttcggttgatttttaaaaattcatccaaaccaaac 12681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10174098 - 10174149
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| |||| |||  ||||||||||||||||| |||||||||||||    
T  10174098 catgcggtttggtttcgtttggttgatttttaaaaagttatccaaaccaaac 10174149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 9988919 - 9988879
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| ||| ||||||||||||||||||||||||| |||||    
T  9988919 gtttgattcggttgatttttaaaaagtcatccaaatcaaac 9988879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 40900153 - 40900102
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40900153 catgcggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaac 40900102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 5262034 - 5261983
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  5262034 catgcggtttggtttagttcagttgatttttaaaaagtcatccaaaccaaac 5261983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 23937592 - 23937537
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  23937592 aaaatatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 23937537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 29644195 - 29644144
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  29644195 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 29644144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 30194045 - 30193994
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  30194045 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 30193994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 50571028 - 50570977
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  50571028 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 50570977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 36077586 - 36077636
Alignment:
Q  174 atgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  36077586 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 36077636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 42557737 - 42557787
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaa 223  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  42557737 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaa 42557787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 10218805 - 10218850
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10218805 tattacattaactctaatattgccaacttgttacaaaataaacata 10218850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 23937483 - 23937438
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  23937483 tattacattaactctaatattgcaaacttgttacaaaataaacata 23937438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 30193941 - 30193896
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  30193941 tattacattaactctaatattgccaacttgttacaaaataaacata 30193896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 29636786 - 29636837
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  29636786 catgcggtttggtttggttcggttgatttttaaaaagccatccaaaccaaac 29636837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 40900045 - 40900000
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  40900045 tattacattaactctaatattgccaacttattacaaaataaacata 40900000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 5261931 - 5261887
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacat 276  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  5261931 tattacattaactctaatattgccaacttgttaaaaaataaacat 5261887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 6333439 - 6333483
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  6333439 attacattaactctaatattaccaacttgttacaaaataaacata 6333483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 31301366 - 31301406
Alignment:
Q  237 cattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  31301366 cattaactctaatattgccaacttgttacaaaataaacata 31301406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 8176563 - 8176520
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaaca 275  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  8176563 tattacattaactctaatattgcccacttgttacaaaataaaca 8176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 40806888 - 40806837
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  40806888 catgcgatttggtttggttcggttgatttttaaaaaatcatccaaaccaaac 40806837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 43630586 - 43630641
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||||||| ||||||||  ||||||||||||||||||||||||| |||||    
T  43630586 aaaatatgcggtttggtttggtttggttgatttttaaaaagtcatccaaatcaaac 43630641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 48996097 - 48996148
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  48996097 catgtggtttggtttggttcggttgatttttaaaaagttatccaaaccaaac 48996148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 32136814 - 32136859
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||    
T  32136814 tattacattaactctaatattgtcaacttgtaacaaaataaacata 32136859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 40806778 - 40806733
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||    
T  40806778 tattacattaactctaatattgtcaacttgttacataataaacata 40806733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 48996201 - 48996246
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||    
T  48996201 tattacattaactctaatattgtcaacttgtcacaaaataaacata 48996246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 51394835 - 51394880
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  51394835 tattacattaattctaatattgccaacttattacaaaataaacata 51394880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 4233751 - 4233822
Alignment:
Q  60 aatattaaaccaacaatgaagccgttacaaaacatactctcctatatatttctcatttcattggagttcatt 131  Q
    ||||||||||||||||||||| | || |||||||||  ||| | |||||| |||||||||||| | ||||||    
T  4233751 aatattaaaccaacaatgaagtcatttcaaaacataacctcatgtatattcctcatttcattgcaattcatt 4233822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10218691 - 10218742
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||| ||||||||||||||| | |||||||||||| ||||    
T  10218691 catgcggtttggtttgattcagttgatttttatatagtcatccaaacaaaac 10218742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 32136705 - 32136756
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||| |||||||||  |||||||||||||| |||||||||||||||    
T  32136705 catgcgatttggtttggttcgattgatttttaaaaattcatccaaaccaaac 32136756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 52344849 - 52344888
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaata 271  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  52344849 tattccattaactctaatattgccaacttgttacaaaata 52344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 14866785 - 14866823
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaa 207  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  14866785 aaaacatgcggtttggtttggttcagttgacttttaaaa 14866823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 6333335 - 6333375
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||  ||||||||||||||||||||||||| |||||    
T  6333335 gtttggtttggttgatttttaaaaagtcatccaaatcaaac 6333375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 8176656 - 8176616
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||  ||||||||||||||||||||| |||||||||    
T  8176656 gtttggtttggttgatttttaaaaagtcatctaaaccaaac 8176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 43630695 - 43630739
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  | ||||||| |||||||||||    
T  43630695 attacattaactctaatattgcatatttgttacgaaataaacata 43630739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 52344756 - 52344796
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||  || |||||||||||||||||||||||||||    
T  52344756 gtttggttcgattaatttttaaaaagtcatccaaaccaaac 52344796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 35402279 - 35402224
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  35402279 aaaacatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 35402224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 6004457 - 6004406
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  6004457 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 6004406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 33360968 - 33361017
Alignment:
Q  175 tgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  33360968 tgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 33361017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 39097957 - 39098010
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaa 222  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||||||||    
T  39097957 aaaacatgcggtttgatttggttcagttgatttttaaaaagtcgtccaaaccaa 39098010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 4669717 - 4669666
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  4669717 catgcggtttggtttggttcggttgatttttaaaaagtcatccgaaccaaac 4669666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 10369220 - 10369275
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| ||| |||||  ||||||||||||||||||||||||||||||    
T  10369220 aaaacatgcggtttggttcggttcgtttgatttttaaaaagtcatccaaaccaaac 10369275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 21586913 - 21586862
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||||||||    
T  21586913 catgcagtttggtttgattcagttgatttttaaaaagtcatccaaaccaaac 21586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 34794607 - 34794658
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  34794607 catgcgatttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 34794658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 51149727 - 51149676
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  51149727 catgcggtttggtttggttcggttgatttttaaaaagtgatccaaaccaaac 51149676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 6004354 - 6004309
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  6004354 tattacattaactctaatattgccaacttattacaaaataaacata 6004309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 9827745 - 9827701
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  9827745 attacattaactctaatattgcgaacttgatacaaaataaacata 9827701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 43030430 - 43030480
Alignment:
Q  174 atgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||| ||||    
T  43030430 atgcagtttggtttggttcggttgatttttaaaaagtcatccaaactaaac 43030480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 21586807 - 21586762
Alignment:
Q  233 attacattaactctaa-tattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  21586807 attacattaactctaaatattgccaacttgttacaaaataaacata 21586762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 32880418 - 32880463
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||    
T  32880418 tattacattaactctaatattgtcaacttgttataaaataaacata 32880463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 35532118 - 35532073
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  35532118 tatttcattaactctaatattgccaacttattacaaaataaacata 35532073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 50562536 - 50562496
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataa 272  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  50562536 tattacattaactctaatattgccaacttattacaaaataa 50562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 9827836 - 9827797
Alignment:
Q  185 tttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  9827836 tttggttaggttgatttttaaaaagtcatccaaaccaaac 9827797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 32880325 - 32880364
Alignment:
Q  185 tttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  32880325 tttggttcggttgatttttaaaaagtcatacaaaccaaac 32880364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 33002643 - 33002682
Alignment:
Q  236 acattaactctaatattgctaacttgttacaaaataaaca 275  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  33002643 acattaactctaatattgtcaacttgttacaaaataaaca 33002682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 48032918 - 48032868
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  48032918 catgcggtttggtt-ggttcggttgatttttaaaaattcatccaaaccaaac 48032868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 27642125 - 27642084
Alignment:
Q  236 acattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||  |||||||||||||||| |||||    
T  27642125 acattaactctaatattgtcaacttgttacaaaatagacata 27642084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 43030547 - 43030592
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||  |||||||| || |||||||||||||||||||    
T  43030547 tattacattaactacaatattgccaatttgttacaaaataaacata 43030592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 9811399 - 9811454
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9811399 aaaacatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 9811454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 17916925 - 17916872
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaa 222  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  17916925 aaaacatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaa 17916872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 11375910 - 11375965
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||    
T  11375910 aaaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 11375965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 36413710 - 36413659
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  36413710 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 36413659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 44035319 - 44035370
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  44035319 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 44035370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 44979839 - 44979788
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  44979839 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 44979788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 18357021 - 18357066
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  18357021 tattacattaactctaatattgccaacttgttacaaaataaacata 18357066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 19937081 - 19937036
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19937081 tattacattaactctaatattgccaacttgttacaaaataaacata 19937036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 16578648 - 16578699
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  16578648 catgcggtttggtttggttcgattgatttttaaaaagtcatccaaaccaaac 16578699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25298325 - 25298270
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||    
T  25298325 aaaacattcggttcggtttggttcggttgatttttaaaaagtcatccaaaccaaac 25298270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 25298217 - 25298172
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  25298217 tattacattaactctaatattgccaacttgttgcaaaataaacata 25298172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 44979736 - 44979691
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  44979736 tattacattaactctaatattgccaacttattacaaaataaacata 44979691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 34910431 - 34910475
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  34910431 attacattaactctaatattgccaatttgttacaaaataaacata 34910475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 44035431 - 44035471
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataa 272  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  44035431 tattacattaactctaatattgccaacttgttacaaaataa 44035471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 11376018 - 11376063
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||    
T  11376018 tatttcattaactctaatattgtcaacttgttacaaaataaacata 11376063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 17916821 - 17916776
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||    
T  17916821 tattacgttaactctaatgttgccaacttgttacaaaataaacata 17916776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 42785590 - 42785545
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| || || ||||||||||||||||    
T  42785590 tattacattaactctaatattgccaaattattacaaaataaacata 42785545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 19937198 - 19937144
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||| ||||| |||||||||  |||||||||||||||||||||||| |||||    
T  19937198 aaaacatg-ggtttggtttggttcgattgatttttaaaaagtcatccaaatcaaac 19937144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 42785698 - 42785648
Alignment:
Q  174 atgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| |||||||||  |||||||||||||| |||| ||||||||||    
T  42785698 atgcggtttggtttggttcgcttgatttttaaaaactcattcaaaccaaac 42785648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 20493757 - 20493812
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  20493757 aaaacatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 20493812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 39256706 - 39256655
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39256706 catgcggtttagtttggttcggttgatttttaaaaagtcatccaaaccaaac 39256655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 8211291 - 8211342
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  8211291 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 8211342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 32954050 - 32954101
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32954050 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 32954101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 33474460 - 33474511
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  33474460 catgcggtttagtttggttcggttgattttaaaaaagtcatccaaaccaaac 33474511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 45691806 - 45691861
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  45691806 aaaacatgcggtttggtttggttcggttgatttttaaaaagtcatccaaactaaac 45691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 24911014 - 24910969
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  24911014 tattacattaactctaatattgccaacttgttacaaaataaacata 24910969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 44918663 - 44918708
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  44918663 tattacattaactctaatattgccaacttgttacaaaataaacata 44918708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 51252381 - 51252336
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  51252381 tattacattaactctaatattgccaacttgttacaaaataaacata 51252336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 33474564 - 33474608
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  33474564 attacattaactctaatattgccaacttgttacaaaataaacata 33474608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 42789668 - 42789628
Alignment:
Q  183 agtttggttcagttgatttttaaaaagtcatccaaaccaaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42789668 agtttggttcagttgatttttaaaaagtcatccaaaccaaa 42789628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 5155413 - 5155362
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  5155413 catgcgatttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 5155362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 1161709 - 1161664
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  1161709 tattacattaactctaatattgccaacttattacaaaataaacata 1161664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 45691918 - 45691963
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  45691918 tattacattaactctaatattggcaacttgttacaaaataaacata 45691963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 1161812 - 1161761
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  1161812 catgtggtttggtttggtttggttgatttttaaaaagtcatccaaaccaaac 1161761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 16529570 - 16529519
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  16529570 catgccgtttggtttggttcggttgatttttaaaaagtcattcaaaccaaac 16529519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 39256597 - 39256555
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaac 274  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  39256597 tattacattaactctaatattgccaacttgttaccaaataaac 39256555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 51252485 - 51252435
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaa 223  Q
    |||| ||||| ||||||||  ||||||||||||||||||||||||||||||    
T  51252485 catgtggtttggtttggttgggttgatttttaaaaagtcatccaaaccaaa 51252435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 11899135 - 11899180
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||| | || |||||||||||||||||||    
T  11899135 tattacattaactctaatatttccaaattgttacaaaataaacata 11899180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 16529451 - 16529410
Alignment:
Q  236 acattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  16529451 acattaactctaatattgtcaacttgttacaaaataaacata 16529410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 32954170 - 32954214
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  32954170 tattacattaactctaatattgccaacttgttac-aaataaacata 32954214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 33910737 - 33910692
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||    
T  33910737 tattacattaaccctattattgccaacttgttacaaaataaacata 33910692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 11899029 - 11899069
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  11899029 gtttggttcggttgatttttaaaaaatcatccaaaccaaac 11899069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 42789574 - 42789530
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||    
T  42789574 attacatcaactctaatattgccgacttgttacaaaataaacata 42789530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 44918566 - 44918606
Alignment:
Q  184 gtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  44918566 gtttggttcggttgatttttaaaaagtcatccaaacgaaac 44918606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 29389045 - 29389096
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||||  |||||||   ||||||||||||||||||||||||||||||    
T  29389045 catgcggtttgatttggtttgattgatttttaaaaagtcatccaaaccaaac 29389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 29389154 - 29389199
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||  ||||||||||| || |||||||||||||||||||    
T  29389154 tattacattagttctaatattgccaaattgttacaaaataaacata 29389199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 5953 - 5902
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5953 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 5902  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 5874222 - 5874171
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5874222 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 5874171  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 12270569 - 12270620
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  12270569 catgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 12270620  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 13802048 - 13802001
Alignment:
Q  177 cggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  13802048 cggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaac 13802001  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 13810935 - 13810888
Alignment:
Q  177 cggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  13810935 cggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaac 13810888  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 33550328 - 33550383
Alignment:
Q  169 aaaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  33550328 aaaacatgatgtttagtttggttcggttgatttttaaaaagtcatccaaaccaaac 33550383  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 10390987 - 10390942
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10390987 tattacattaactctaatattgccaacttgttacaaaataaacata 10390942  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10590863 - 10590914
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  10590863 catgcggtttggtttggttcggttgatttttaaaaagtcatcccaaccaaac 10590914  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 5287977 - 5287923
Alignment:
Q  170 aaacatgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||    
T  5287977 aaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaacgaaac 5287923  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 13801938 - 13801893
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  13801938 tattacattaactctaatattgccaatttgttacaaaataaacata 13801893  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 15859850 - 15859895
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15859850 tattacattaactctaatattgccaacttgttagaaaataaacata 15859895  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 33550445 - 33550490
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  33550445 tattacattaactctaaaattgccaacttgttacaaaataaacata 33550490  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 35040280 - 35040231
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaa 222  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  35040280 catgcggtttggtttggtttggttgatttttaaaaagtcatccaaaccaa 35040231  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 15859738 - 15859789
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  15859738 catgcggtttggtttgattcggttgatttttaaatagtcatccaaaccaaac 15859789  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 35040182 - 35040137
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  35040182 tattacattgactctaatattgccaacttattacaaaataaacata 35040137  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 5287868 - 5287824
Alignment:
Q  233 attacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||    
T  5287868 attacattaactctaatattgccaacttataacaaaataaacata 5287824  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 10494334 - 10494291
Alignment:
Q  234 ttacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  10494334 ttacattaactataatattgccaacttattacaaaataaacata 10494291  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 10494439 - 10494400
Alignment:
Q  185 tttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  10494439 tttggttcggttgatttttaaaaagtcatccaaactaaac 10494400  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 25136784 - 25136835
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||||||||  ||||||||| ||||  |||||||||||||||||||||||||    
T  25136784 catgcggttcggtttggttcggttggattttaaaaagtcatccaaaccaaac 25136835  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 10590970 - 10591016
Alignment:
Q  232 tattacattaactctaatattgctaacttgt-tacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||    
T  10590970 tattacattaactctaatattgccaacttatatacaaaataaacata 10591016  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 25136897 - 25136938
Alignment:
Q  236 acattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||  |||||||||||||| |||||||    
T  25136897 acattaactctaatattgtcaacttgttacaaaacaaacata 25136938  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 10391092 - 10391040
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaa-gtcatccaaaccaaac 224  Q
    ||||| |||| |||||||||| ||||||| |||||| ||||||||||||||||    
T  10391092 catgctgtttggtttggttcacttgatttctaaaaaagtcatccaaaccaaac 10391040  T

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Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 106156 - 106201
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  106156 tattacattaactctaatattgccaacttgttacaaaataaacata 106201  T

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Target: scaffold0013; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 128763 - 128808
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  128763 tattacattaactctaatattgccaacttgtaacaaaataaacata 128808  T

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Target: scaffold0013; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 128649 - 128696
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaacc 220  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||    
T  128649 catgtggtttggtttggttctgttgatttttaaaaagtcatccaaacc 128696  T

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Target: scaffold0013; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 106042 - 106089
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaacc 220  Q
    |||| ||||| ||||||||| |||||||||||||| ||||||||||||    
T  106042 catgtggtttggtttggttcggttgatttttaaaatgtcatccaaacc 106089  T

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Target: scaffold0059 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 69610 - 69559
Alignment:
Q  173 catgcggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  69610 catgtggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 69559  T

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Target: scaffold0059; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 69496 - 69451
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  69496 tattatattaactctaatattgccaacttgttacaaaataaacata 69451  T

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Target: scaffold0029 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 40640 - 40594
Alignment:
Q  178 ggtttagtttggttcagttgatttttaaaaagtcatccaaaccaaac 224  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  40640 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaac 40594  T

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Target: scaffold0029; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 40536 - 40491
Alignment:
Q  232 tattacattaactctaatattgctaacttgttacaaaataaacata 277  Q
    ||||||||| ||||||||||| | ||||||||||||||||||||||    
T  40536 tattacattgactctaatattaccaacttgttacaaaataaacata 40491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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