View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2317_low_17 (Length: 250)

Name: NF2317_low_17
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2317_low_17
NF2317_low_17
[»] chr7 (12 HSPs)
chr7 (1-241)||(4863322-4863562)
chr7 (116-242)||(4697748-4697874)
chr7 (116-233)||(4846579-4846696)
chr7 (117-241)||(4784394-4784518)
chr7 (117-241)||(4816823-4816947)
chr7 (125-241)||(4661237-4661353)
chr7 (117-241)||(4712625-4712749)
chr7 (125-232)||(4666377-4666484)
chr7 (125-241)||(4643137-4643253)
chr7 (127-232)||(4630351-4630456)
chr7 (127-232)||(4652962-4653067)
chr7 (116-179)||(4636352-4636415)
[»] chr4 (1 HSPs)
chr4 (115-232)||(18926296-18926413)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4863562 - 4863322
Alignment:
Q  1 gcatctgttattggagtgatagtttttgttagaagaagaagaagatttgaatctcatgttgaagaaatggatgaaagctcatggacaaaaaagaaagaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863562 gcatctgttattggagtgatagtttttgttagaagaagaagaagatttgaatctcatgttgaagaaatggatgaaagctcatggacaaaaaagaaagaag 4863463  T
Q  101 gcgaagtttcatcgtctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4863462 gcgaagtttcatcgtctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattgg 4863363  T
Q  201 agttggagggttcggcaacgtgtacaaaggttatattgatg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4863362 agttggagggttcggcaacgtgtacaaaggttatattgatg 4863322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 4697748 - 4697874
Alignment:
Q  116 ctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcgg 215  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| ||    
T  4697748 ctttaccatcccatttgtgccgctattttacaatagcggagataagagccgctacaaacaacttcgaagatatttttatcattggagttggagggtttgg 4697847  T
Q  216 caacgtgtacaaaggttatattgatga 242  Q
     ||||||| ||||||||| || |||||    
T  4697848 taacgtgttcaaaggttacatcgatga 4697874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 4846579 - 4846696
Alignment:
Q  116 ctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcgg 215  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||  |||||||||||||| || |||||||| |||||||||| ||||||||||||    
T  4846579 ctttaccgtcccatttgtgccgctattttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcattggagctggagggttcgg 4846678  T
Q  216 caacgtgtacaaaggtta 233  Q
    ||||||||||||||||||    
T  4846679 caacgtgtacaaaggtta 4846696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 4784394 - 4784518
Alignment:
Q  117 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 216  Q
    |||||||||||||||||||||||||||||||||| | || |||| ||| |||||||||||||| || |||||||| ||||| || |||||||||||||||    
T  4784394 tttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggc 4784493  T
Q  217 aacgtgtacaaaggttatattgatg 241  Q
    || ||||||||||||||||||||||    
T  4784494 aatgtgtacaaaggttatattgatg 4784518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 4816823 - 4816947
Alignment:
Q  117 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 216  Q
    |||||||||||||||||||||||||||||||||| | || |||| ||| |||||||||||||| || |||||||| ||||| || |||||||||||||||    
T  4816823 tttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggttggagggttcggc 4816922  T
Q  217 aacgtgtacaaaggttatattgatg 241  Q
    || ||||||||||||||||||||||    
T  4816923 aatgtgtacaaaggttatattgatg 4816947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 4661353 - 4661237
Alignment:
Q  125 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 224  Q
    |||||||||||||||| ||||||||  ||||||| ||||| || ||||| |||||||| |||  |||||||||||||||||||||||| |||||||||||    
T  4661353 cccatttgtgccgctactttacaattgcagagatcagagcagccacaaaaaactttgatgatgatttcatcattggagttggagggtttggcaacgtgta 4661254  T
Q  225 caaaggttatattgatg 241  Q
    |||||||| | ||||||    
T  4661253 caaaggttgtgttgatg 4661237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 4712625 - 4712749
Alignment:
Q  117 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 216  Q
    |||||||||||||||||| || | |||||| |||   || |||||||| |||||||||||||| || |||||||| ||||| || |||||||| ||||||    
T  4712625 tttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggc 4712724  T
Q  217 aacgtgtacaaaggttatattgatg 241  Q
    ||||||||||||||||| |||||||    
T  4712725 aacgtgtacaaaggttacattgatg 4712749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 4666484 - 4666377
Alignment:
Q  125 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 224  Q
    ||||||||||||| |  ||||||||  ||||||| ||||| || ||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||    
T  4666484 cccatttgtgccggtcctttacaattgcagagatcagagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttggcaacgtgta 4666385  T
Q  225 caaaggtt 232  Q
    ||||||||    
T  4666384 caaaggtt 4666377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 4643253 - 4643137
Alignment:
Q  125 cccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgta 224  Q
    ||||| |||||||||  ||||||||  ||||||| | ||| |||||||||||||| || |||  ||| ||||| |||||||||||||| |||||||||||    
T  4643253 cccatctgtgccgctcctttacaatcgcagagatcaaagcagctacaaacaacttcgatgatgcttttatcatcggagttggagggtttggcaacgtgta 4643154  T
Q  225 caaaggttatattgatg 241  Q
    |||||||| | ||||||    
T  4643153 caaaggttgtgttgatg 4643137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 4630456 - 4630351
Alignment:
Q  127 catttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtaca 226  Q
    |||||||| ||||| ||||||||  | ||||| | ||| || ||||||||||||||| ||  ||||||||| ||| |||||||||| || ||||||||||    
T  4630456 catttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacaatgatttcatcatcggatttggagggtttgggaacgtgtaca 4630357  T
Q  227 aaggtt 232  Q
    ||||||    
T  4630356 aaggtt 4630351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 4653067 - 4652962
Alignment:
Q  127 catttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggcaacgtgtaca 226  Q
    |||||||| ||||  || |||||  ||||||| | ||| || ||||| ||||| || ||| |||||||||| || |||||||| || |||||||||||||    
T  4653067 catttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtaca 4652968  T
Q  227 aaggtt 232  Q
    ||||||    
T  4652967 aaggtt 4652962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 4636415 - 4636352
Alignment:
Q  116 ctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactt 179  Q
    ||||||||||| ||||||||||||| ||||||||  ||||||| ||||| || ||||| |||||    
T  4636415 ctttaccatcctatttgtgccgctactttacaatcgcagagatcagagcagccacaaaaaactt 4636352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 18926296 - 18926413
Alignment:
Q  115 tctttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcg 214  Q
    ||||||||  |||||||||||||||| ||||||||  ||||||||| ||| || ||||| |||||||| |||  ||| ||||| |||||||||||||| |    
T  18926296 tctttaccgccccatttgtgccgctactttacaattgcagagataaaagcagccacaaataactttgatgatgatttaatcatcggagttggagggtttg 18926395  T
Q  215 gcaacgtgtacaaaggtt 232  Q
    |||||||||| |||||||    
T  18926396 gcaacgtgtataaaggtt 18926413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University