View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_low_2 (Length: 633)
Name: NF2317_low_2
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 39 - 624
Target Start/End: Complemental strand, 50550324 - 50549738
Alignment:
| Q |
39 |
ggtacaaggtggcttatgagggatagcatctgatttgtagtggttgtgggtgttatggacatgttactcctaatttcaccacaacggcggctatgaaaac |
138 |
Q |
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| T |
50550324 |
ggtacaaggtggcttatgagggattacatctgatttgtagtggttgtgggtgttatggacatgttactcataatttcaccacaacggcggctatgaaaac |
50550225 |
T |
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| Q |
139 |
aattgtcagcactccgattgttgacagtgttcaggtcacccaaaatacagctgcaagcgctatggtacaacaagatcacagtaatgaaacggttgtcaat |
238 |
Q |
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| T |
50550224 |
aattgtcggcactccgattgttgacagtgttcaggtcacccaaaatacagctgcaagcgctatggtacaataagatcacagtaatgaaacggttgtcaat |
50550125 |
T |
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| Q |
239 |
gagtcaactaatcttcctaaatccttggaaaatatctcacaggacctacaatctggtgaagaaacgcatggtgattggttggtagttagtgataggacga |
338 |
Q |
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| T |
50550124 |
gagtcaactaatcttcctaaatccttggaaaatatctcacatgacctacaatctggtgaagaaacgcatggtgattggttggtagttagtgataggagga |
50550025 |
T |
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| Q |
339 |
gaaacaataggaaacaatttaatgctaatcatggaaaaaatattcctataataaaggggtataataaattctctcctctatc-------------aagga |
425 |
Q |
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| T |
50550024 |
----------gaaacaatttaatgctaatcatggaaaaaatattcc-------------tataataaattctctcctctatcaatcaacgaagataagga |
50549948 |
T |
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| Q |
426 |
ccaattaacctttcatgtagggtcaaatagttcaagtgggaag----catataccatgggataagg----nnnnnnngaaaagaaagatacgtgaagacc |
517 |
Q |
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| T |
50549947 |
ccaattgacctttcatgtagggtgaaatatttcaagtgggaagcatacatataccatgggataaggaaaaaagaaaagaaaagaaagatacgtgaagacc |
50549848 |
T |
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| Q |
518 |
ccataaagaacctcaatgaagtttctccttctatgactgacgacaac---aataaaccaaatagtgggaaaaaggttatgaaggaacaagtaatggtttt |
614 |
Q |
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| T |
50549847 |
ccataaagaacctcaatgaagtttctccttctatgactgacgacaacaataataaaccaaatagtgggaaaaaggttatgaaggaacaagtaatggtttt |
50549748 |
T |
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