View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_low_3 (Length: 551)
Name: NF2317_low_3
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 537
Target Start/End: Original strand, 49131526 - 49132046
Alignment:
| Q |
12 |
gatgttgagaatggacatgaaaatacacatagagatttacaagagcccttcattcaacatggaaaggatgctactgttgactatcatgatattgaatcta |
111 |
Q |
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| T |
49131526 |
gatgttgagagtggacatgaaaatacacatagagatttacaagagcccttcattcaacatggaaaggatgctactgttgactatcatgatattgaatcta |
49131625 |
T |
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| Q |
112 |
ataaaagggctgaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagtttcttttg |
211 |
Q |
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| T |
49131626 |
ataaaagggctgaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgcggttctttttcatttggaacttgtgtaagtttcttttg |
49131725 |
T |
|
| Q |
212 |
aattttcttaaaattataatatggtgcatttttagctgagagctattattttggcaggtgggatattcatcacccactcaagcagctatcagggcagatc |
311 |
Q |
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| T |
49131726 |
aattttcttaaaattataatatggtgcatttttagctgaaagctattattttggcaggtgggatattcatcacccactcaagcagctatcagggcagatc |
49131825 |
T |
|
| Q |
312 |
ttaatctatctatctctgaggttagtattccaaatgaaaatgtcaatgaggaggggaatttgcaccaactaataataatgtcttgtcttgtggcagtttt |
411 |
Q |
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| T |
49131826 |
ttaatctatctatctctgaggttagtattccaaatgaaaatgtcaatgaggaggggaatttgcaccaactaataataa-----tgtcttgtggcagtttt |
49131920 |
T |
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| Q |
412 |
ccatgtttggttctttagtaacaattggtgcaatgcttggagctataacaagtggtcggattacagatttcattggtcgaaaaggggtaatgaaaatgtt |
511 |
Q |
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| T |
49131921 |
ccatgtttggttctttagtaacaattggtgcaatgcttggagctataacaagtggtcggattacagatttcattggtcgaaaaggggtaatgaaaatgtc |
49132020 |
T |
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| Q |
512 |
aatttccttcgaatatatgcacttta |
537 |
Q |
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| T |
49132021 |
aatttccttcgaatatatgcacttta |
49132046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 6922509 - 6922589
Alignment:
| Q |
123 |
gaaaatggatccattggaatggttctgctcagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt |
203 |
Q |
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| T |
6922509 |
gaaaatggatccattggaatggttctgcttagcacatttgttgctgtttgtggttctttttcatttggaacttgtgtaagt |
6922589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 402 - 500
Target Start/End: Original strand, 6925120 - 6925218
Alignment:
| Q |
402 |
tggcagttttccatgtttggttctttagtaacaattggtgcaatgcttggagctataacaagtggtcggattacagatttcattggtcgaaaaggggta |
500 |
Q |
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| T |
6925120 |
tggcagttttcaatgtttggttctttggtgaccattggtgcaatgcttggagctataacaagtggtcgagttactgatatcattggcaggaaaggggta |
6925218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 6923009 - 6923065
Alignment:
| Q |
266 |
caggtgggatattcatcacccactcaagcagctatcagggcagatcttaatctatct |
322 |
Q |
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| T |
6923009 |
caggtgggttattcagcacccactcaagcggctatcagggctgatcttaatctatct |
6923065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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