View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2317_low_4 (Length: 533)
Name: NF2317_low_4
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 164 - 517
Target Start/End: Complemental strand, 9446631 - 9446278
Alignment:
| Q |
164 |
acaatataaaagattaaaaagagatggatacggttttagatttttgtgaatgaaataggaacatgataaagactaatgacagtgagtgagactgtttttt |
263 |
Q |
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| T |
9446631 |
acaatataaaagattaaaaagagatggatacggttttagatttttgtgaatgaaataggaacatgataaagactaatgacaatgagtgagactgtttttt |
9446532 |
T |
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| Q |
264 |
attagacgaataagtgagactttgttgaatattagacacaaaattatatgagtttaataatgtataacaatcttacacatgcatttaataatgttctacc |
363 |
Q |
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| T |
9446531 |
attagacgaatgagtgagactttgttgaatattagacacaaaattatacgagtttaataatgtataacaatcttacacatgtatttaataatgttctacc |
9446432 |
T |
|
| Q |
364 |
acatcaattaataaatacgataattcatgtatttttatgattattagttaacgtgacaacatataattggatgtgtgtaaaataattttacaaagacaaa |
463 |
Q |
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| T |
9446431 |
agattaatcaatgaatacgacaactcatgtatttttatgtttattagttagcgtgacaacatatcattggatatgtgtaaaataattttacaaagacaaa |
9446332 |
T |
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| Q |
464 |
gtatactaactaattcaaattatataacgtatgtagcttactgaatgattgata |
517 |
Q |
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| T |
9446331 |
gtatactaattaattcaaattatataacgtatgtagcttactgaatgattgata |
9446278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 9446788 - 9446687
Alignment:
| Q |
8 |
catcatcaaaatattttgttggggtcatgttgctatttcaactttatattgtttccataatatacatttaataattctaggtcttttcatcataatacat |
107 |
Q |
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| T |
9446788 |
catcatcaaaatattttgttggggtcatgttgctatttcaactttatattgttcccataatatacatttaataattctaggtcttttcatcataatacat |
9446689 |
T |
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| Q |
108 |
ag |
109 |
Q |
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|| |
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| T |
9446688 |
ag |
9446687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 29939863 - 29939961
Alignment:
| Q |
329 |
aacaatcttacacatgcatttaataatgttctaccacatcaattaataaatacgataattcatgtatttttatgattattagttaacgtgacaacatat |
427 |
Q |
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|||||| |||||||| |||| ||| || || ||| || |||||||||||||| ||||||| || ||||||||| |||||| || |||| ||||||||| |
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| T |
29939863 |
aacaattttacacatacattcaatgattttttactacttcaattaataaatatgataatttatatatttttatatttattaattgacgtaacaacatat |
29939961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 437
Target Start/End: Original strand, 48252401 - 48252515
Alignment:
| Q |
323 |
atgtataacaatcttacacatgcatttaataatgttctaccacatcaattaataaatacgataattcatgtatttttatgattattagttaacgtgacaa |
422 |
Q |
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||||| || ||| |||||||| |||| ||| |||| | ||||||||||||||||||| ||||| ||||||||||| || ||||||||| | |||||| |
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| T |
48252401 |
atgtacaataattttacacatacattcaatgatgtgtttccacatcaattaataaatatgataactcatgtattttcatatttattagttcatttgacaa |
48252500 |
T |
|
| Q |
423 |
catataattggatgt |
437 |
Q |
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| T |
48252501 |
cacatcactggatgt |
48252515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 41742165 - 41742128
Alignment:
| Q |
419 |
acaacatataattggatgtgtgtaaaataattttacaa |
456 |
Q |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
41742165 |
acaacatgtaattagatgtgtgtaaaataattttacaa |
41742128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 54441217 - 54441253
Alignment:
| Q |
362 |
ccacatcaattaataaatacgataattcatgtatttt |
398 |
Q |
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|||||||||||||| ||||||||||||||||| |||| |
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| T |
54441217 |
ccacatcaattaatgaatacgataattcatgtgtttt |
54441253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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