View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2317_low_9 (Length: 473)
Name: NF2317_low_9
Description: NF2317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2317_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 442
Target Start/End: Complemental strand, 49628942 - 49628528
Alignment:
| Q |
13 |
taggagcagcaacgtttcttcttgtgtgttaattgtgattgcgaaatgcggcaattgggaagcgtccattgttgtgtttaattttcctaaaatgtagatg |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628942 |
taggagcagcaacgtttctt---gtgtgttaattgtgattgcgaaatgcggcaattgggaagcgtccattgttgtgtttaattttcctaaaatgtagatg |
49628846 |
T |
|
| Q |
113 |
gatctgtacgggttttattttctttttcattgatcactattgctgctactatttgaagtagtaacaaaatattttgtacgaaaatagatacgaaaaaata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49628845 |
gatctgtacgggttttattttctttttcatcgatcactattgctgctactatttgaagtagtaacaaaatattttgtacg------------aaaaaata |
49628758 |
T |
|
| Q |
213 |
ggaccagtcaatcactgaattaatgacaaaaatggagggttaattaatttaattaaagattcagtcaaagatcggatgtcttaaagtaattcaattcatt |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49628757 |
ggaccattcaatcactgaattaatgacaaaaatggagggttaattaatttaattaaagattcagtcaaagatcggatgtgttaaagtaattcaattcatt |
49628658 |
T |
|
| Q |
313 |
tatttacaaacnnnnnnnnnnnnnnnnnaattcaaatttaaggtttgaattaaaaattcaccttcttttatctattcattcattatttcttttctttttg |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49628657 |
tatttacaaacttttcttttatatttttaattcaaatttaaggtttgaattaaaaattcaccttcttttatctattcattcattatttcttttctttttg |
49628558 |
T |
|
| Q |
413 |
gatcctacagcattactattcaatcttttc |
442 |
Q |
| |
|
| ||||||| |||||||||||||||||||| |
|
|
| T |
49628557 |
ggtcctacaacattactattcaatcttttc |
49628528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University