View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2321_high_5 (Length: 227)

Name: NF2321_high_5
Description: NF2321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2321_high_5
NF2321_high_5
[»] chr4 (2 HSPs)
chr4 (140-198)||(3781809-3781867)
chr4 (173-227)||(3781751-3781805)
[»] chr5 (4 HSPs)
chr5 (54-121)||(16843775-16843842)
chr5 (140-186)||(13129181-13129227)
chr5 (140-182)||(16844054-16844096)
chr5 (148-188)||(591308-591348)
[»] chr7 (2 HSPs)
chr7 (59-107)||(21018059-21018107)
chr7 (54-115)||(4874321-4874382)
[»] chr3 (1 HSPs)
chr3 (140-177)||(1997340-1997377)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 3781809 - 3781867
Alignment:
Q  140 ataaacattttcttaactagaaatccttaaagagtgtctttaaggcacttgtagcaaga 198  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3781809 ataaacattttcttaactagaaatccttaaaaggtgtctttaaggcacttgtagcaaga 3781867  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 3781751 - 3781805
Alignment:
Q  173 gtgtctttaaggcacttgtagcaagatctatataatattgaattatttaactttt 227  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3781751 gtgtatttaaggcacttgtagcaagacccatataatattgaattatttaactttt 3781805  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 16843775 - 16843842
Alignment:
Q  54 actcattaacaacatttaaatagtaaatttttaaagaaattgatgcatttaatgtattaaaaagtgaa 121  Q
    |||| |||||||  |||||||||||| |||||| ||||||||||||||||| |||||| |||| ||||    
T  16843775 actctttaacaatctttaaatagtaagtttttatagaaattgatgcatttattgtattgaaaattgaa 16843842  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 13129227 - 13129181
Alignment:
Q  140 ataaacattttcttaactagaaatccttaaagagtgtctttaaggca 186  Q
    |||||||||||||||| ||| |||||||||||| |||||||| ||||    
T  13129227 ataaacattttcttaattaggaatccttaaagaatgtctttagggca 13129181  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 16844054 - 16844096
Alignment:
Q  140 ataaacattttcttaactagaaatccttaaagagtgtctttaa 182  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||    
T  16844054 ataatcattttcttaattagaaatccttaaagagtgcctttaa 16844096  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 591308 - 591348
Alignment:
Q  148 tttcttaactagaaatccttaaagagtgtctttaaggcact 188  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  591308 tttctttattagaaatccttaaagagtgtctttagggcact 591348  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 21018059 - 21018107
Alignment:
Q  59 ttaacaacatttaaatagtaaatttttaaagaaattgatgcatttaatg 107  Q
    |||||||| ||||||||||||||||||| |||||||||| |||| ||||    
T  21018059 ttaacaacctttaaatagtaaatttttatagaaattgattcattcaatg 21018107  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 4874382 - 4874321
Alignment:
Q  54 actcattaacaacatttaaatagtaaatttttaaagaaattgatgcatttaatgtattaaaa 115  Q
    |||| |||||||| |||||||| ||| |||||| | ||||||||||||| |||| |||||||    
T  4874382 actctttaacaacctttaaataataagtttttataaaaattgatgcattcaatgcattaaaa 4874321  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 1997340 - 1997377
Alignment:
Q  140 ataaacattttcttaactagaaatccttaaagagtgtc 177  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  1997340 ataaacattttcttaattaggaatccttaaagagtgtc 1997377  T

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