View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2321_low_2 (Length: 322)

Name: NF2321_low_2
Description: NF2321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2321_low_2
NF2321_low_2
[»] chr4 (17 HSPs)
chr4 (6-284)||(5035613-5035891)
chr4 (3-261)||(2525745-2526003)
chr4 (178-309)||(2536654-2536782)
chr4 (204-311)||(2486430-2486537)
chr4 (5-77)||(2536575-2536647)
chr4 (5-81)||(2486297-2486373)
chr4 (182-261)||(2491241-2491320)
chr4 (203-255)||(2625296-2625348)
chr4 (5-82)||(2491118-2491195)
chr4 (199-309)||(2519366-2519473)
chr4 (203-262)||(2467679-2467738)
chr4 (201-262)||(5101944-5102005)
chr4 (19-82)||(2467534-2467597)
chr4 (207-249)||(2547613-2547655)
chr4 (8-82)||(5106306-5106380)
chr4 (210-255)||(2380052-2380097)
chr4 (33-61)||(2519251-2519279)
[»] chr2 (1 HSPs)
chr2 (30-74)||(44575183-44575227)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 5035613 - 5035891
Alignment:
Q  6 gagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaactactgttggtgatggacagatctt 105  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| | || |||||    
T  5035613 gagattttgaccaagaatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagagacctgaaactactgtttgtgattggcatatctt 5035712  T
Q  106 gttttgagacgtggtagagagaccttattctgcgggggttatcggtgaaacctagattcccatcaggacgaggaaggttgaaggtgttgttttcctcgtc 205  Q
    ||| ||||||||| ||||||||| ||||||||||||||| |||||  |||||||||||||||| ||||||| |||| ||||| |||||||| ||||||||    
T  5035713 gttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattcccattaggacgaagaagtttgaatgtgttgttctcctcgtc 5035812  T
Q  206 gttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccattttt 284  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5035813 gttgaggaatttgaagatgttttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccattttt 5035891  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 2525745 - 2526003
Alignment:
Q  3 ttggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaactactgttggtgatggacagat 102  Q
    ||||||||| |||||||||||||||| |  |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||  |||     
T  2525745 ttggagattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagatctgaaactaccgttggtgatgggtagag 2525844  T
Q  103 cttgttttgagacgtggtagagagaccttattctgcgggggttatcggtg-aaacctagattcccatcaggacgaggaaggttgaaggtgttgttttcct 201  Q
     |||||||||||||||||||||||  | |||||||||  || ||| | || ||||||| |||||||||| ||||| ||||||||||||||||||| ||||    
T  2525845 attgttttgagacgtggtagagagttcctattctgcgctggatat-gttgaaaacctatattcccatcaagacgaagaaggttgaaggtgttgttgtcct 2525943  T
Q  202 cgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttg 261  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  2525944 cgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatatgaacgtgttg 2526003  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 2536654 - 2536782
Alignment:
Q  178 gaaggttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgc 277  Q
    ||||| ||||||||||| | ||||||| |||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||    |||||||||||     
T  2536654 gaaggctgaaggtgttgctgtcctcgtggttgagaaatttgaagatgtattcccataactcctctggtaaatatgaacgtgttg---gtgttgctgttga 2536750  T
Q  278 catttttgttctttttcctttcttagggtttt 309  Q
     | |||||||||||||| |||| |||||||||    
T  2536751 aaattttgttctttttcgtttcctagggtttt 2536782  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 2486430 - 2486537
Alignment:
Q  204 tcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttcctttcttag 303  Q
    |||||||||||||| |||||  | |||||||| |||||||| ||||  || | |||||||||||||||||||||||||||||||||||||| |||||||     
T  2486430 tcgttgaggaatttaaagattcgctcccataattcctctgggaaatacgagcatgttgcttctgttgctgttgccatttttgttctttttcgtttcttat 2486529  T
Q  304 ggttttcc 311  Q
    ||||||||    
T  2486530 ggttttcc 2486537  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 2536575 - 2536647
Alignment:
Q  5 ggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctg 77  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||||||||| ||||||||||||||||    
T  2536575 ggagattttgaccaagaatcgaagaaggttggtgatggacagaaactgttttgaaatgagggagagagacctg 2536647  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 2486297 - 2486373
Alignment:
Q  5 ggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaac 81  Q
    ||||||| ||||| ||||||| || || |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  2486297 ggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacgagggagagagacctaaaac 2486373  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 2491241 - 2491320
Alignment:
Q  182 gttgaaggtgttgttttcctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttg 261  Q
    ||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||| | ||||||||||  |||||||||||    
T  2491241 gttgaagatgttgttgtcctcgtcgttcaggaatttgaggatgtgttcccataacttctctggtaaacatgaacgtgttg 2491320  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 2625348 - 2625296
Alignment:
Q  203 gtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaac 255  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  2625348 gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 2625296  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 2491118 - 2491195
Alignment:
Q  5 ggagattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact 82  Q
    ||||||| ||||| | ||||| || || || ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  2491118 ggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgagacgagtgagagagacctgaaact 2491195  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 2519366 - 2519473
Alignment:
Q  199 cctcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgttgctgttgccatttttgttctttttccttt 298  Q
    |||||||||||||||| ||||  ||| | |||||||| ||||| ||||||| ||||| || ||    || ||||| |||||||||||||||||||  |||    
T  2519366 cctcgtcgttgaggaacttgacaatgcgctcccataactcctccggtaaatatgaacatgatg---ttgctgctgctgccatttttgttctttttggttt 2519462  T
Q  299 cttagggtttt 309  Q
    |||||||||||    
T  2519463 cttagggtttt 2519473  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 2467679 - 2467738
Alignment:
Q  203 gtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgc 262  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||| ||||| ||||||    
T  2467679 gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc 2467738  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 5102005 - 5101944
Alignment:
Q  201 tcgtcgttgaggaatttgaagatgtgttcccataaatcctctggtaaatttgaacgtgttgc 262  Q
    |||||||||||||||||||||||| | |||||||| || || ||||||| ||||| ||||||    
T  5102005 tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgc 5101944  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 2467534 - 2467597
Alignment:
Q  19 agaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact 82  Q
    |||||||||| |  ||||| ||||||| |||||||||||| |||| |||||||||| |||||||    
T  2467534 agaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaact 2467597  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 2547613 - 2547655
Alignment:
Q  207 ttgaggaatttgaagatgtgttcccataaatcctctggtaaat 249  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  2547613 ttgaggaatttgaagatgtgctcccataactcatctggtaaat 2547655  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 5106380 - 5106306
Alignment:
Q  8 gattttgaccaagaatcgaaggcgattggtgatggacagaaactgttttgaaacgagggagagagacctgaaact 82  Q
    |||| ||||| |||||||| | || ||||||||||||| |||||||||||| |||   ||||||||| |||||||    
T  5106380 gattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaact 5106306  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 2380097 - 2380052
Alignment:
Q  210 aggaatttgaagatgtgttcccataaatcctctggtaaatttgaac 255  Q
    |||||||||| ||||| ||||||||| || ||||||||||||||||    
T  2380097 aggaatttgatgatgtattcccataactcatctggtaaatttgaac 2380052  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 2519251 - 2519279
Alignment:
Q  33 ttggtgatggacagaaactgttttgaaac 61  Q
    |||||||||||||||||||||||||||||    
T  2519251 ttggtgatggacagaaactgttttgaaac 2519279  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 44575227 - 44575183
Alignment:
Q  30 cgattggtgatggacagaaactgttttgaaacgagggagagagac 74  Q
    ||||||||||| || |||||||||||||| |||| ||||||||||    
T  44575227 cgattggtgattgagagaaactgttttgagacgatggagagagac 44575183  T

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