View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2321_low_3 (Length: 280)
Name: NF2321_low_3
Description: NF2321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2321_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 3219833 - 3220084
Alignment:
| Q |
18 |
atcatttccccccacttgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagactgccatcctcaccttgcggcttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219833 |
atcatttccccccacttgcggctttccaatggctctttctgcaacctttccagggggactttctacaacttccagactgccatcctcaccttgcggcttt |
3219932 |
T |
|
| Q |
118 |
ccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3219933 |
ccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatc |
3220032 |
T |
|
| Q |
218 |
gactacctataaaatattcatcgattcgtgatcagattttgggttctcctat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220033 |
gactacctataaaatattcatcgattcgtgatcagattttgggttctcctat |
3220084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 96 - 266
Target Start/End: Complemental strand, 15985677 - 15985507
Alignment:
| Q |
96 |
gccatcctcaccttgcggctttccagcggccctttctgcaacaaaattatatccgtgcatcagagctatttagtcaaggatattaagcagcgacaccctt |
195 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| | ||||| |
|
|
| T |
15985677 |
gccatcctcaccttgtggctttccagcagccctttctacaacaaaatgctatccgtgcatcagagctatttagtcaaagatattgagcagcggcgccctt |
15985578 |
T |
|
| Q |
196 |
ttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcc |
266 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||| |||||||| |
|
|
| T |
15985577 |
cgcatgttgttttccttgtatggactacctataaaatattcatcgattcatgatcggagtttaggttctcc |
15985507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 15985725 - 15985680
Alignment:
| Q |
26 |
cccccacttgcggctttccaatggctctttctgcaacctttccagg |
71 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||| ||| |
|
|
| T |
15985725 |
ccccctcttgcggctttccattggccctttctgcaacctttcaagg |
15985680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 23729106 - 23729204
Alignment:
| Q |
168 |
gtcaaggatattaagcagcgacacccttttcatgttgttttccttgtatcgactacctataaaatattcatcgattcgtgatcagattttgggttctcc |
266 |
Q |
| |
|
|||||||| ||| |||||| | ||||||||||||||||| |||||| | | |||||| ||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
23729106 |
gtcaaggaaattgagcagcaatgcccttttcatgttgtttgccttgtgtgggttacctacaaagtactcattgattcgtgatcagatttagggttctcc |
23729204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University