View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2321_low_5 (Length: 239)
Name: NF2321_low_5
Description: NF2321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2321_low_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3782174 - 3782402
Alignment:
| Q |
1 |
tcagcaaaataatttttaaaattttttattccacataattgtgataaaatgtagaaaaatagtatgattannnnnnnaaagaaattagtacaataaaata |
100 |
Q |
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| T |
3782174 |
tcagcaaaataatttttaaaattttttattccacataattgtgataaaatgtagaaaaatagtatgattatttttttaaagaaattagtacaataaaata |
3782273 |
T |
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| Q |
101 |
taaatttgataattaatttattgatttagaaaacaacgtataagtgaactttaatttacaagtctatcgtagaaggccnnnnnnnnngtggtagtcgagg |
200 |
Q |
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| T |
3782274 |
taaatttgataattaattaattgatttacaa------gtataagtgaactttaatttacaagtctatcgtagaaggcctttttttttgtggtggtcgatg |
3782367 |
T |
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| Q |
201 |
ttcgaattctagatcttacatatattatgcattgt |
235 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
3782368 |
ttcgaactctagatcttacatatattatgcattgt |
3782402 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 31885936 - 31885986
Alignment:
| Q |
189 |
tggtagtcgaggttcgaattctagatcttacatatattatgcattgttcat |
239 |
Q |
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| T |
31885936 |
tggtagtcggagttcgaattccagatcttacatatattatgcattgttcat |
31885986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 26611052 - 26611081
Alignment:
| Q |
210 |
tagatcttacatatattatgcattgttcat |
239 |
Q |
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| T |
26611052 |
tagatcttacatatattatgcattgttcat |
26611081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 18324895 - 18324931
Alignment:
| Q |
199 |
ggttcgaattctagatcttacatatattatgcattgt |
235 |
Q |
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| T |
18324895 |
ggttcgaatcctagatcttgcatatattatgcattgt |
18324931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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