View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2322_low_1 (Length: 490)
Name: NF2322_low_1
Description: NF2322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2322_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 11427237 - 11426777
Alignment:
| Q |
17 |
aaatataaatgtaggtttcattactccatccatccgtctcatattaaatatcgtttaatagtttccaaagcaatttacgtaaatattttaaatgtgacac |
116 |
Q |
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| T |
11427237 |
aaatataaatgtaggtttcattactccatcc----gtctcatattaaatatcgtttaatagtttccaaagcaatttacgtaaatattttaaatgtgacac |
11427142 |
T |
|
| Q |
117 |
tgaacatgtgacgatcgagagccgtgtttttcacagcacaaaatataatgcatattaacgaccattaaatggaaatctgaggtgattttaattgtcactt |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11427141 |
tgaacatgtgacgatcgagacccgtgtttttcacagcacaaaatataatgcatattaacgaccattaaatgtaaatctgaggtgattttaattgtcactt |
11427042 |
T |
|
| Q |
217 |
agaaaacaagcatattgcacatggaaaggactcactcaacagtatttagttcctgttgttttacaaactttgaactgtataaacccttcaaaacattgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11427041 |
agaaaacaagcatattgcacatggaaaggactcactcaacagtatttagttcctgttgttttacaaactttgaactgtataaacccttcaaaacattgat |
11426942 |
T |
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| Q |
317 |
tgatcaaatcataattctttttggtacaaatcaaataataattccaaaggtttcttttggaaatatttccattttgtattattgtacgttaagaaaaata |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11426941 |
tgatcaaatcataattctttttggtacaaatcaaataataattccaaaggtttcttttggaaatatttccattttgtattattgtacgttaagaaaaata |
11426842 |
T |
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| Q |
417 |
aatgtactccctagacaataattgtttaaaaacatatctatttttatataaaaacagcttcatct |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11426841 |
aatgtactccctagacaataattgtttaaaaacatatctatttttatataaaaacagcttcatct |
11426777 |
T |
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