View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2322_low_3 (Length: 365)
Name: NF2322_low_3
Description: NF2322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2322_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 75 - 350
Target Start/End: Complemental strand, 9462854 - 9462579
Alignment:
| Q |
75 |
tggattttcttttgctaagaagattattccccttgttaaggaaaatgcacgtccaatgaaagacatcaagaaagtaagttctactactaaatcatgcact |
174 |
Q |
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| T |
9462854 |
tggattttcttttgctaagaagattattccccttgttaaggaaaatgcacgtccaatgaaagacatcaagaaagtaagttctactactaaatcatgcact |
9462755 |
T |
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| Q |
175 |
tcctaaatgctatatatgtagttaaagattatttcccttgttaaggaagctatgcaacattgacaccgaagacatatctattgtctgacacaacactcac |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
9462754 |
tcctaaatgctatatatgtagttaaagattatttcccttgttaaggaagctatgcaacattgacaccgaagacatgtctattgtctgacacgacactcac |
9462655 |
T |
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| Q |
275 |
acgtgtaattacattcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgtcagtgtttcatagtttg |
350 |
Q |
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| T |
9462654 |
acgtgtaattacgttcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgtcagtgtttcatagtttg |
9462579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 9462909 - 9462880
Alignment:
| Q |
20 |
ctgcagccaaagtcttggttgagtcaagtg |
49 |
Q |
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| T |
9462909 |
ctgcagccaaagtcttggttgagtcaagtg |
9462880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 10335771 - 10335804
Alignment:
| Q |
313 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
346 |
Q |
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| T |
10335771 |
gtgtcactgtcgtgtctgtgtcagtgtttcatag |
10335804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 33523453 - 33523486
Alignment:
| Q |
313 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
346 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
33523453 |
gtgtcaatgtcgtgtctgtgtcagtgttttatag |
33523486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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