View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2322_low_4 (Length: 352)
Name: NF2322_low_4
Description: NF2322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2322_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 16022378 - 16022274
Alignment:
| Q |
66 |
tagtgttatatgttctgtaacatggtttatttcatcgcatacaccaaaaccaaaaatactttctattcaactcatggattgtggaaatgataagcatgaa |
165 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
16022378 |
tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaactcatggactgtggaaatgagaagcatgaa |
16022279 |
T |
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| Q |
166 |
atgac |
170 |
Q |
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|||| |
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| T |
16022278 |
gtgac |
16022274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 14389758 - 14389871
Alignment:
| Q |
57 |
agttttaagtagtgttatatgttctgtaacatggtttatttcatcgcatacaccaaaaccaaaaatactttctattcaactcatggattgtggaaatgat |
156 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||||||||| | ||||||||||||| |||| |||| ||||||||| |
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| T |
14389758 |
agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattcaattcattgattttggaaatgaa |
14389857 |
T |
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| Q |
157 |
aagcatgaaatgac |
170 |
Q |
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||||||||| |||| |
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| T |
14389858 |
aagcatgaagtgac |
14389871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 14368549 - 14368619
Alignment:
| Q |
123 |
actttctattcaactcatggattgtggaaatgataagcatgaaatgacaccaaacttgcattgaaacagat |
193 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
14368549 |
actttccattcaactcatggattgtggaaatgataagcttgaaatgacaccaaacttacattgaaacagat |
14368619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 14368613 - 14368681
Alignment:
| Q |
230 |
aacagatactaatttaataacataagatccatgataaccacaaagcatctaactcttaagtgttggaaa |
298 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
14368613 |
aacagatactaatttaataacacaagaaccatgataaccacaaagcatctaactattaagtgttggaaa |
14368681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 13853015 - 13852950
Alignment:
| Q |
166 |
atgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttgtaa |
231 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
13853015 |
atgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaattgttgtaa |
13852950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 13881468 - 13881418
Alignment:
| Q |
54 |
tggagttttaagtagtgttatatgttctgtaacatggtttatttcatcgca |
104 |
Q |
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| T |
13881468 |
tggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgca |
13881418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 14398108 - 14398173
Alignment:
| Q |
167 |
tgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttgtaac |
232 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
14398108 |
tgacaccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgtaac |
14398173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 13883456 - 13883392
Alignment:
| Q |
167 |
tgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttgtaa |
231 |
Q |
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|||||||||||||||||| ||||||||| | |||||||||||| ||||||| ||||| ||||||| |
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| T |
13883456 |
tgacaccaaacttgcattcaaacagatgaagaacacatactttgactagagatcaattgttgtaa |
13883392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 14391953 - 14392014
Alignment:
| Q |
167 |
tgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttg |
228 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||| |||| |
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| T |
14391953 |
tgacaccaaaattgcattcaaacagatgcagaacacatgctttcacccgaggtcaattgttg |
14392014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 13856789 - 13856742
Alignment:
| Q |
53 |
atggagttttaagtagtgttatatgttctgtaacatggtttatttcat |
100 |
Q |
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||||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
13856789 |
atggaattttaaggagtgttatatgtttggtaacatggtttatttcat |
13856742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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