View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2322_low_5 (Length: 264)
Name: NF2322_low_5
Description: NF2322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2322_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 2327198 - 2327454
Alignment:
| Q |
1 |
tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327198 |
tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat |
2327297 |
T |
|
| Q |
101 |
gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag |
200 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2327298 |
gccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag |
2327397 |
T |
|
| Q |
201 |
gttccagagggtggccatgtcgatttgtcggaaaaatttgaattcgccgtgatgatg |
257 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
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|
| T |
2327398 |
gttccggagggtggccatgtcgatttgtcagaaaaatttgaattcaccgtggtgatg |
2327454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 2321346 - 2321589
Alignment:
| Q |
2 |
ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2321346 |
ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattatagggagtaaagagataaagatgatg |
2321445 |
T |
|
| Q |
102 |
ccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaagg |
201 |
Q |
| |
|
||||||||||||| || ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| || |
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|
| T |
2321446 |
ccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagc |
2321545 |
T |
|
| Q |
202 |
ttccagagggtggccatgtcgatttgtcggaaaaatttgaattc |
245 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
2321546 |
ttccggagggtggccatgttgatttgtcggaaaaagatgaattc |
2321589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2294030 - 2294263
Alignment:
| Q |
1 |
tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat |
100 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |
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|
| T |
2294030 |
tggatcctcgtgtttgggaggacccgttggagtttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgat |
2294129 |
T |
|
| Q |
101 |
gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2294130 |
gccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcgattggaag |
2294229 |
T |
|
| Q |
201 |
gttccagagggtggccatgtcgatttgtcggaaa |
234 |
Q |
| |
|
||||||||||| || ||||| |||||| |||||| |
|
|
| T |
2294230 |
gttccagagggcgggcatgttgatttgacggaaa |
2294263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 2303644 - 2303878
Alignment:
| Q |
2 |
ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||| ||||||||| |
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|
| T |
2303644 |
ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggttttggaaggatgagaattttgacattacagggagtaaggagataaagatgatg |
2303743 |
T |
|
| Q |
102 |
ccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaagg |
201 |
Q |
| |
|
||||||| |||||| || ||||||||||| | | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2303744 |
ccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttggaatttcgattggaagc |
2303843 |
T |
|
| Q |
202 |
ttccagagggtggccatgtcgatttgtcggaaaaa |
236 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
2303844 |
ttccagagggcggctatgttgatttgtcggaaaaa |
2303878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2310361 - 2310594
Alignment:
| Q |
1 |
tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat |
100 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| |
|
|
| T |
2310361 |
tggatcgtcgtgtttgggaggacccattggagtttaagccagaaaggtttttgaaggatgagacttttgtcattccaggaagtaaagagataaagatgat |
2310460 |
T |
|
| Q |
101 |
gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2310461 |
gccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaag |
2310560 |
T |
|
| Q |
201 |
gttccagagggtggccatgtcgatttgtcggaaa |
234 |
Q |
| |
|
||||||||||| || ||||| |||||| |||||| |
|
|
| T |
2310561 |
gttccagagggcgggcatgttgatttgacggaaa |
2310594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2330913 - 2331126
Alignment:
| Q |
1 |
tggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
2330913 |
tggaccctcgtgtttgggaggatccaatggaatttaagccagaaaggtttttgaaggatgagacttttgacattacaggaagtaaagagataaagatgat |
2331012 |
T |
|
| Q |
101 |
gccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaag |
200 |
Q |
| |
|
||| |||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2331013 |
gccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaag |
2331112 |
T |
|
| Q |
201 |
gttccagagggtgg |
214 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
2331113 |
gttcccgagggtgg |
2331126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 2351220 - 2351454
Alignment:
| Q |
2 |
ggatcctcgtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
2351220 |
ggatcctcgtgtttgggaggatccaatggagtttaagccagagaggtttttgaaggatgaaacatttgacattacggggagtaaagagataaagatgatg |
2351319 |
T |
|
| Q |
102 |
ccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaagg |
201 |
Q |
| |
|
|| ||||| | || ||| ||||| ||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2351320 |
ccatttggtgttggtaggagaatctgtcccggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaatttcgattggaagg |
2351419 |
T |
|
| Q |
202 |
ttccagagggtggccatgtcgatttgtcggaaaaa |
236 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
2351420 |
ttccagaaggtgggcatgttgatttgtcggaaaaa |
2351454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 41127234 - 41127478
Alignment:
| Q |
10 |
gtgtttgggaggatccaatggagtttaagccagaaaggtttttgaaggatgagacttttgatattacagggagtaaagagatcaagatgatgccgtttgg |
109 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
41127234 |
gtgtttgggaagatccattggagtttaaaccagaaaggtttttgaaggatgaggcttttgatattaccgggactaaagagataaagatgatgccgtttgg |
41127333 |
T |
|
| Q |
110 |
agctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagag |
209 |
Q |
| |
|
|| || || ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| |||| |
|
|
| T |
41127334 |
agttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagag |
41127433 |
T |
|
| Q |
210 |
gg---tggccatgtcgatttgtcggaaaaatttgaattcgccgtg |
251 |
Q |
| |
|
|| ||| |||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
41127434 |
ggagctggttatgttgatttgtcggaaaaaactgaattcaccgtg |
41127478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 26494893 - 26495009
Alignment:
| Q |
84 |
aaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt |
183 |
Q |
| |
|
|||||||| |||||||||||||||||||| | || || |||||||| | ||||| || || | |||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
26494893 |
aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt |
26494992 |
T |
|
| Q |
184 |
ggaatttcgattggaag |
200 |
Q |
| |
|
||| || || |||||| |
|
|
| T |
26494993 |
tgaactttgagtggaag |
26495009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 55017070 - 55017117
Alignment:
| Q |
67 |
ttgatattacagggagtaaagagatcaagatgatgccgtttggagctg |
114 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
55017070 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctg |
55017117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 15176408 - 15176287
Alignment:
| Q |
78 |
gggagtaaagagatcaagatgatgccgtttggagctgatagaagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatt |
177 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| | || ||||| ||||| || ||| |||||| || | || |||||||| ||||| || |||| |
|
|
| T |
15176408 |
gggagtaaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaatt |
15176309 |
T |
|
| Q |
178 |
tggtttggaatttcgattggaa |
199 |
Q |
| |
|
| |||| |||||| || ||||| |
|
|
| T |
15176308 |
ttgttttgaattttgagtggaa |
15176287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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