View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2322_low_6 (Length: 242)
Name: NF2322_low_6
Description: NF2322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2322_low_6 |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 24225012 - 24224774
Alignment:
| Q |
3 |
aatatgcacaccgtgaatctaaaaatccaaagaaataataccaattagtggaatgttgcaaattaccatttcgaagcaaacatcacgttcccagtttctc |
102 |
Q |
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| T |
24225012 |
aatatgcacaccgtgaatctaaaaatccaaagaaataataccaattagtggaatgttgcaaattaccatttcgaagcaaacatcatgttcccaatttctc |
24224913 |
T |
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| Q |
103 |
taatttgtttctaccaagcaattgacggaaggaaccatgctttttcttcaatcataaannnnnnnnccgaacaaatgaccaacattaaaaattaaaccaa |
202 |
Q |
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| T |
24224912 |
taatttgtttctaccaagcaattgacggaaggaaccatgctttttcttcaatcataaattttttttccgaataaatgaccaacattaaaaattaaaccaa |
24224813 |
T |
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| Q |
203 |
atcaatcacacaacattccttaaacttttgggaactcaa |
241 |
Q |
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| T |
24224812 |
atcaatcacacaacattccttaaacttttgggaactcaa |
24224774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 10740855 - 10740806
Alignment:
| Q |
192 |
aattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaac |
242 |
Q |
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| T |
10740855 |
aattaaaccaaatcaatcacacaacattcc-caaacttttgggaactcaac |
10740806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 13166727 - 13166680
Alignment:
| Q |
174 |
caaatgaccaacattaaaaattaaaccaaatcaatcacacaacattcc |
221 |
Q |
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| T |
13166727 |
caaaagaccaacactataaattaaaccaaatcaatcacacaaaattcc |
13166680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 9401883 - 9401830
Alignment:
| Q |
188 |
taaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaac |
242 |
Q |
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| T |
9401883 |
taaaaatcaaaccaaatcaatcacacaatattcc-caaatttttgggaactcaac |
9401830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 17927761 - 17927791
Alignment:
| Q |
191 |
aaattaaaccaaatcaatcacacaacattcc |
221 |
Q |
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| T |
17927761 |
aaattaaaccaaatcaatcacacaacattcc |
17927791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 30385488 - 30385429
Alignment:
| Q |
182 |
caacattaaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaac |
242 |
Q |
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||||| || |||||||||||| |||||||||||||||| | ||| ||||||||||||||| |
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| T |
30385488 |
caacactacaaattaaaccaagtcaatcacacaacattgc-caaaattttgggaactcaac |
30385429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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