View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2322_low_7 (Length: 232)
Name: NF2322_low_7
Description: NF2322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2322_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 5913051 - 5912916
Alignment:
| Q |
82 |
gtgttgattttgcagggattgacaaagtatatgacatatccaaaatggaacaaaacgtaagaagcaaaacaagagcaaaacatgaagcctatgcaacagt |
181 |
Q |
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| T |
5913051 |
gtgttgattttgcagggattgacaaagtatatgacatatccaaaatggaacaaaacgtaagaagcaaaacaagagcaaaacatgaagcctatgcaacagt |
5912952 |
T |
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| Q |
182 |
acttcactcctcagaaagctacgtttgtggagcaat |
217 |
Q |
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| T |
5912951 |
acttcactcctcagaaagctacgtttgtggagcaat |
5912916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 5909141 - 5909046
Alignment:
| Q |
122 |
caaaatggaacaaaacgtaagaagcaaaacaagagcaaaacatgaagcctatgcaacagtacttcactcctcagaaagctacgtttgtggagcaat |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||||| || |||||||||||||| |
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| T |
5909141 |
caaaatggaacaaaatgtaagaagcaaaacaagagcaaaacatgaagcctatgcaacaatcctacactcttcagaaagatatgtttgtggagcaat |
5909046 |
T |
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