View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2323_high_13 (Length: 246)

Name: NF2323_high_13
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2323_high_13
NF2323_high_13
[»] chr4 (4 HSPs)
chr4 (134-238)||(8462579-8462683)
chr4 (1-70)||(8462678-8462747)
chr4 (186-238)||(16403076-16403128)
chr4 (186-238)||(45840058-45840110)
[»] chr6 (2 HSPs)
chr6 (40-167)||(24323296-24323422)
chr6 (186-216)||(31899274-31899304)
[»] chr3 (1 HSPs)
chr3 (25-148)||(16241543-16241665)
[»] chr1 (3 HSPs)
chr1 (186-234)||(50818588-50818636)
chr1 (185-238)||(27895525-27895578)
chr1 (187-237)||(17425606-17425656)
[»] chr2 (1 HSPs)
chr2 (186-218)||(19177491-19177523)
[»] chr7 (2 HSPs)
chr7 (35-90)||(4877501-4877556)
chr7 (186-238)||(13851696-13851748)
[»] chr8 (1 HSPs)
chr8 (186-238)||(6077344-6077396)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 8462683 - 8462579
Alignment:
Q  134 aatttaccattctcaagtcaaacctaacacttagggaagaaattattagaaatttttgaacaagccaaaatgaaatatattaaattacaataggtgattc 233  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  8462683 aattttccattctcaaatcaaaactaacacttagggaagaaattattagaaatttttgaacaagtcaaaatgaaatatattaaattacaataggtgatta 8462584  T
Q  234 atctc 238  Q
    |||||    
T  8462583 atctc 8462579  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8462747 - 8462678
Alignment:
Q  1 ctaaaacaattaggataacgaagatactatgattatcacactaaaacaatgtttacaattaaccaatttt 70  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8462747 ctaaaacaatgaggataacgaagatactatgattatcacactaaaacaatgtttacaattaaccaatttt 8462678  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 16403076 - 16403128
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaaattacaataggtgattcatctc 238  Q
    |||||||||||||||||||| ||||||||  || || | ||||||||||||||    
T  16403076 tttttgaacaagccaaaatggaatatatttgatcaccaaaggtgattcatctc 16403128  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 45840058 - 45840110
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaaattacaataggtgattcatctc 238  Q
    ||||||||||| | |||||| ||||||||||||||| | | ||||||||||||    
T  45840058 tttttgaacaaactaaaatggaatatattaaattaccaaaagtgattcatctc 45840110  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 24323422 - 24323296
Alignment:
Q  40 actaaaacaatgtttacaattaaccaattttaaacaagatgttcacaattgaaataaatcttccacaatcaaattataaatactcaattacaagaattta 139  Q
    |||||||||||||||||  |||||||||||| |||| ||||||||||||| | || |||  ||||||||||||||||||| |||  ||||||||   ||     
T  24323422 actaaaacaatgtttacggttaaccaattttgaacatgatgttcacaatttagat-aataatccacaatcaaattataaacactttattacaagtccttg 24323324  T
Q  140 ccattctcaagtcaaacctaacacttag 167  Q
     ||||||||| |||||| ||||||||||    
T  24323323 acattctcaaatcaaacttaacacttag 24323296  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 31899304 - 31899274
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaa 216  Q
    |||||||||||||||||||||||||||||||    
T  31899304 tttttgaacaagccaaaatgaaatatattaa 31899274  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 16241543 - 16241665
Alignment:
Q  25 tactatgattatcacactaaaacaatgtttacaattaaccaattttaaacaagatgttcacaattgaaataaatcttccacaatcaaattataaatactc 124  Q
    ||||| ||| |||| ||||||| ||| |||||| |||||||||||||||||||| |||||||||||| || |||  |||||||| ||||| |||  |||     
T  16241543 tactaggataatcaaactaaaaaaatctttacagttaaccaattttaaacaagaagttcacaattgatat-aatgatccacaataaaattttaagcactt 16241641  T
Q  125 aattacaagaatttaccattctca 148  Q
    ||||||||||  ||| ||||||||    
T  16241642 aattacaagaccttaacattctca 16241665  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 50818636 - 50818588
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaaattacaataggtgattca 234  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||||    
T  50818636 tttttgaacaagtcaaaatgaaatatattaaataacaagaggtgattca 50818588  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 27895578 - 27895525
Alignment:
Q  185 atttttgaacaagccaaaatgaaatatattaaattacaataggtgattcatctc 238  Q
    |||||| |||||||||||||||||||||||| || || | ||||||||||||||    
T  27895578 attttttaacaagccaaaatgaaatatattagatcaccaaaggtgattcatctc 27895525  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 17425606 - 17425656
Alignment:
Q  187 ttttgaacaagccaaaatgaaatatattaaattacaataggtgattcatct 237  Q
    ||||||| |||||||||||||||||||||| |||  | |||||||||||||    
T  17425606 ttttgaataagccaaaatgaaatatattaacttatcaaaggtgattcatct 17425656  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 19177523 - 19177491
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaaat 218  Q
    |||||||||||||||||||||||||||||||||    
T  19177523 tttttgaacaagccaaaatgaaatatattaaat 19177491  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 4877556 - 4877501
Alignment:
Q  35 atcacactaaaacaatgtttacaattaaccaattttaaacaagatgttcacaattg 90  Q
    ||||||||||||||||||||| ||| || ||| ||| |||||||| ||||||||||    
T  4877556 atcacactaaaacaatgtttagaataaatcaaatttcaacaagatattcacaattg 4877501  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 13851748 - 13851696
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaaattacaataggtgattcatctc 238  Q
    ||||||||||||||||||| |||||||||| || ||||   ||||||||||||    
T  13851748 tttttgaacaagccaaaataaaatatattagatcacaaagagtgattcatctc 13851696  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 6077396 - 6077344
Alignment:
Q  186 tttttgaacaagccaaaatgaaatatattaaattacaataggtgattcatctc 238  Q
    ||||| ||| |||||||||||||||||||| ||||  | ||||||||||||||    
T  6077396 tttttaaaccagccaaaatgaaatatattatattatcaaaggtgattcatctc 6077344  T

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