View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_high_4 (Length: 402)
Name: NF2323_high_4
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 48276591 - 48276963
Alignment:
| Q |
15 |
gttgggagaactataaatccagtaaatggagcagttgggctgttatggactggaaagtggcaattctgtcaacttggtgttgaacaagtgctgagaggta |
114 |
Q |
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| T |
48276591 |
gttgggagaactataaatccagtaaatggagcagttgggctgttatggactggaaagtggcaattctgtcaacttggtgttgaacaagtgctgagaggta |
48276690 |
T |
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| Q |
115 |
acggcggctcgttgactgcactccctcatcagttgttaggtttggatcatgatagtagttcaattcatcatcaatatcaccaacaccaatctgggttgat |
214 |
Q |
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| T |
48276691 |
acggcggcgcgttgacggcactccctgatcagttgttaggtgtggatcatgatagtagttcaattcatcatcaatatcaccaacagcaatctgggttgat |
48276790 |
T |
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| Q |
215 |
gtcacactctagagttctgaaaaaccaagcagaaaagcaacgtgcggggacacatgatgagtccgaggaatcggagtcgtcttccacgttcggaagtaga |
314 |
Q |
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| T |
48276791 |
gtcatactctagagtggtgaaaaaccaagcagaaaagcaacgtgcggggacac---atgagtcagaggaatcgga---gtcttccacgttgggaagtaga |
48276884 |
T |
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| Q |
315 |
acaagaacagaagattgttcttatgtttatgctaattctcaaactcaaaggaaccaactccttacactattctgatgat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48276885 |
acaagaacagaagattgttcttatgtttatgctaattctcaaactcaaaggaaccaactccttacactattcttatgat |
48276963 |
T |
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