View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_high_7 (Length: 335)
Name: NF2323_high_7
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 31855236 - 31854932
Alignment:
| Q |
6 |
aaaatacatattacaaatcaactaagcaaaagtgattgaattgcaagttgta-aacattataagataacttgccactatcaacaatccttcatgcatatc |
104 |
Q |
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||||||||||||||||||||||||||||||||| || |||||| |||||||| |||||| |||||||| || ||||||| |||||||||||||| ||||| |
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| T |
31855236 |
aaaatacatattacaaatcaactaagcaaaagtaatcgaattgaaagttgtacaacattgtaagataaattaccactataaacaatccttcatggatatc |
31855137 |
T |
|
| Q |
105 |
actagagatacccttgaaaaccttttcaatacataagtggaagtaaatctaaataaaacctggcagagttagagtttcaactaggccactcaaattgacc |
204 |
Q |
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||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
31855136 |
actagggatacccttggaaacctttttcatacataagtgcaagtaaatctaaataaaaccaggcagagttagagtttcaactagaccactcaaattgacc |
31855037 |
T |
|
| Q |
205 |
tgctccactttagatgagatgagatgattttagagactcacttcaacacctaaaatggggagctccggtatagatgctctaagttagcagtagatcttaa |
304 |
Q |
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|||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
31855036 |
tgctccactttagatgagataa-----ttttagagactcatttgaacacctaaaatggggagctccagtatagaagctctaagttagccgtagatcttaa |
31854942 |
T |
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| Q |
305 |
ttagacatta |
314 |
Q |
| |
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|||||||||| |
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| T |
31854941 |
ttagacatta |
31854932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 9091784 - 9091665
Alignment:
| Q |
100 |
atatcactagagatacccttgaaaaccttttcaatacataagtggaagtaaatctaaataaaacctggcagagttagagtttcaactaggccactcaaat |
199 |
Q |
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|||||||||| |||||||||| |||||||||| ||| |||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
9091784 |
atatcactagggatacccttggaaaccttttccatatataagtacaagtaaatctaaataataccgggcagagttagagtttcaagtaggccactcaaat |
9091685 |
T |
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| Q |
200 |
tgacctgctccactttagat |
219 |
Q |
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|||||||||||||||||||| |
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| T |
9091684 |
tgacctgctccactttagat |
9091665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9091852 - 9091782
Alignment:
| Q |
1 |
ctcctaaaatacatattacaaatcaactaagcaaaagtgattgaattgcaagttgtaaacattataagata |
71 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||| |
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| T |
9091852 |
ctccaaaaatacatattacaaatcaactaagctaaagtcattgaattgcaagttgtaaacgttataggata |
9091782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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