View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_low_1 (Length: 956)
Name: NF2323_low_1
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 483
Target Start/End: Complemental strand, 8491301 - 8490851
Alignment:
| Q |
21 |
aaactacttgggtattattttgagatccttttgccccatttatttatatgaaacttttatatgacaatggtttacatttgttttcaagttctattcaatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8491301 |
aaactacttgggtattattttgagatccttttgccccatttatttatatgaaacttttatatgacaatggtttacatttgttttcaagttctattcaatt |
8491202 |
T |
|
| Q |
121 |
catagtttatcttcctattgggtttcatccggttcttaattcttatgttgttttttattgctttctctttcttgnnnnnnnnnn--------atgctgtg |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
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| T |
8491201 |
catagtttaccttcctattgggtttcatccggttcttaattcttatgttgttttttattgctctctctttttttattttatttttattttttatgctgtg |
8491102 |
T |
|
| Q |
213 |
aaatttatttttctagattggttttttaattgtaagtgcaggattcataacttgttaagggaatggtcgttttactttgtagatttggttgtaatagtaa |
312 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
8491101 |
aaatttatttgtctaggttggttttttaattgtaagtgcaggattcataccttgttaagggaatggttgtta------------------gtaatagtaa |
8491020 |
T |
|
| Q |
313 |
ttatgtagtgaaaaggctacaagggtcaaataggttatactaattttttcagtttagctgaattgtgctgctaattccattcagaacacgaaccaatttg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8491019 |
ttatgtagtgaaaaggctacaagggtcaaataggttatactaattttttcagtttagctgaattgtgatgctaattccattcagaacacgaaccaatttg |
8490920 |
T |
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| Q |
413 |
aaagcatcatggccttattgttagaaactagtgcgcccatattattagtaacttgcattgcattgctgaat |
483 |
Q |
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| T |
8490919 |
atagcatcatggccttattgttagaaactagt--gcccatattattagtaacttgcattgcattgctgaat |
8490851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 549 - 940
Target Start/End: Original strand, 51661653 - 51662063
Alignment:
| Q |
549 |
ctctctaattggtccacatcatccatatcttgaatcatttt-ttggcctaccgcttcttcaggttactgcatcttttatttactttttcttttggtcttc |
647 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51661653 |
ctctttaattggtccacatcatccatatcttgaatcatttttttggcctaccgcttcttaaggttactgcatcttttatttactttttcttttggtcttc |
51661752 |
T |
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| Q |
648 |
taccaagaccagcataggaaagcaattgatctatctccccagttcaaaccaccagtaccatcccttcatccacccttaatccacctccatcaacaaccac |
747 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51661753 |
taccaagaccagcatagggaagcaattgatctatctccccagttcaaaccaccaggaccatcccttcatccacccttaatccacctccatcaacaaccac |
51661852 |
T |
|
| Q |
748 |
tcaacttcaaatttgttgtcaatctctcattatgactttaacaaaacaccaaatccacc----------------tccacaccatggccatttaaatttt |
831 |
Q |
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| T |
51661853 |
tcaacttcaaatttgttgtcaatctctcattatgactttaacaaaacaccaaatccaccataaaccttctgttcaaccacaccatggccatttaaatttt |
51661952 |
T |
|
| Q |
832 |
agatccaccaagtacaagcnnnnnnncaccatcaatgccggagaacgtcatttaggtccgggc--atcatccgacctttatctcacaaaccacaatactt |
929 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
51661953 |
agatccacccagtacaagcaaaaaaacaccatcaatgccggagaacgtcatttaggtccgggcatatcatccgacctttatctcacaaaccacgatactt |
51662052 |
T |
|
| Q |
930 |
gacggagaaac |
940 |
Q |
| |
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||||||||||| |
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| T |
51662053 |
gacggagaaac |
51662063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 51662381 - 51662304
Alignment:
| Q |
500 |
aatgagcaatgctagtgtcaaacgcttttaacacactccattggtcacact--ctctaattggtccacatcatccatat |
576 |
Q |
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||||||||||| ||| |||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
51662381 |
aatgagcaatgttagcgtcaaacgctttga-cacactccattggtcacactctctctaattggtccacgtcatccatat |
51662304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 506 - 807
Target Start/End: Original strand, 44976017 - 44976327
Alignment:
| Q |
506 |
caatgctagtgtcaaacgcttttaacacactccattggtcacactctct--aattggtccacatcatccatatcttgaatcattttttggcctaccgctt |
603 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
44976017 |
caatgctagtgtcaaacgcttt-aacacactccattgatcacactctctctaattggtccacatcatctatatcttgaatcattttttggcccaccgctt |
44976115 |
T |
|
| Q |
604 |
cttcaggttactgcatcttttatttactttttcttttggtcttctaccaaga--------ccagcataggaaagcaattgatctatctccccagttcaaa |
695 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
44976116 |
cttcaggttactgcatcttttatttactttttcttttggtcttctaccaagactagaagaccagcatagggaagcaattgatctatctccccagttcaaa |
44976215 |
T |
|
| Q |
696 |
ccaccagtaccatcccttcatccacccttaatccacctccatcaacaaccactcaacttcaaatttgttgtcaatctctcattatgactttaacaaaaca |
795 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44976216 |
ccaccaggaccatcccttcatccacccttgatccacctccatcaacaaccactcaacttcaaatttgttgtcaatctctcattatgactttaacaaaaca |
44976315 |
T |
|
| Q |
796 |
ccaaatccacct |
807 |
Q |
| |
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| |||||||||| |
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| T |
44976316 |
ctaaatccacct |
44976327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 808 - 940
Target Start/End: Original strand, 44976356 - 44976488
Alignment:
| Q |
808 |
ccacaccatggccatttaaattttagatccaccaagtacaagcnnnnnnncaccatcaatgccggagaacgtcatttaggtccgggcatcatccgacctt |
907 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44976356 |
ccacaccatggccatttaaattttagatccaccaagtacaagcaaaaaaacaccttcaatgccggagaacgtcatttaggtccgggcatcatccgacctt |
44976455 |
T |
|
| Q |
908 |
tatctcacaaaccacaatacttgacggagaaac |
940 |
Q |
| |
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||||| ||||||||| ||||||||||||||||| |
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| T |
44976456 |
tatcttacaaaccacgatacttgacggagaaac |
44976488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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