View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_low_12 (Length: 289)
Name: NF2323_low_12
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 33795162 - 33794888
Alignment:
| Q |
7 |
gaaatgttagaagagtttcgaccaattactcccataagaaccattgctcttatgactaaaacattgaaacatgtatccgaggtagaga--acagagaaag |
104 |
Q |
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| T |
33795162 |
gaaatgttagaagagtttcgaccaattactcccataagaaccattgctcttatgactaaaacattgaaacatgtatccgaggtagagacaacagagaaag |
33795063 |
T |
|
| Q |
105 |
ttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcattttttggtttgtccaccagctcgaaggaaagctaga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
33795062 |
ttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggcattttttggtttgcccaccagctcgaaagaaagctaga |
33794963 |
T |
|
| Q |
205 |
gtaacacgaatcaacgagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtg |
279 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33794962 |
gtaacacgaatcaacaagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtg |
33794888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 16780332 - 16780607
Alignment:
| Q |
7 |
gaaatgttagaagagtttcgaccaattactcccataagaaccattgctcttatgactaaaacattgaaacatgtatccgaggtagag--aacagagaaag |
104 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
16780332 |
gaaatgttagaagagtttctaccaattactcccataagaaccattgctcctatgactaaaacattgaaacatgtatccgaggtagagacaacaaagaagg |
16780431 |
T |
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| Q |
105 |
ttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaattgtaggc---attttttggtttgtccaccagctcgaaggaaagct |
201 |
Q |
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|||||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||| || |||| | |
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| T |
16780432 |
ttctaagagagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaa--gtagccataattttttagtttgtccaccagctccaaagaaatca |
16780529 |
T |
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| Q |
202 |
agagtaacacgaatcaacgagaattcagccccaccatctcaagtgttctttcaagttcctcacgatctggcttctgtg |
279 |
Q |
| |
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|||||||||| | |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16780530 |
agagtaacacaacgcaacaagaattcagctctaccatctcaagtgttctttcaagttcctcacgatctggcttctgtg |
16780607 |
T |
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