View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2323_low_14 (Length: 250)

Name: NF2323_low_14
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2323_low_14
NF2323_low_14
[»] chr4 (3 HSPs)
chr4 (25-140)||(598746-598858)
chr4 (120-168)||(44792148-44792196)
chr4 (121-162)||(290601-290642)
[»] chr3 (2 HSPs)
chr3 (173-239)||(53629849-53629915)
chr3 (121-158)||(53629504-53629541)
[»] chr8 (4 HSPs)
chr8 (120-168)||(39779342-39779390)
chr8 (121-170)||(22320895-22320944)
chr8 (121-170)||(32979567-32979616)
chr8 (121-170)||(38628699-38628748)
[»] chr1 (2 HSPs)
chr1 (121-172)||(12761242-12761293)
chr1 (133-170)||(12760944-12760981)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 598746 - 598858
Alignment:
Q  25 atcaacaatcgaattattacccaatataataatagtgggattttgatttgaactagagaaatgtttggaatgtttcttcccgtgcttccacaatcgaata 124  Q
    |||||||||| ||||||||||||||| ||||   ||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  598746 atcaacaatccaattattacccaatagaata---gtgagattttgatttgaattggagaaatgtttgaaatgtttcttcccgtgcttccacaatcgaata 598842  T
Q  125 taaatatatttaacct 140  Q
    ||||||||||||||||    
T  598843 taaatatatttaacct 598858  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 44792148 - 44792196
Alignment:
Q  120 gaatataaatatatttaaccttaattcatatttcaattacaaatcaatt 168  Q
    |||||||||||||||||| || | |||||||||||||||||||||||||    
T  44792148 gaatataaatatatttaaactaatttcatatttcaattacaaatcaatt 44792196  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 290601 - 290642
Alignment:
Q  121 aatataaatatatttaaccttaattcatatttcaattacaaa 162  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  290601 aatataaatatatttaacctaatttcatatttcaattacaaa 290642  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 53629849 - 53629915
Alignment:
Q  173 tatgaattgtttaaattgtttaattcgatgacccgcatttttcatactcgtaaaatccactcccttt 239  Q
    |||||||| ||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  53629849 tatgaattatttgaattgtttaattcgatgatcagcatttttcgtactcgtaaaatccactcccttt 53629915  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 53629504 - 53629541
Alignment:
Q  121 aatataaatatatttaaccttaattcatatttcaatta 158  Q
    |||||||||||||||||||| | |||||||||||||||    
T  53629504 aatataaatatatttaacctaatttcatatttcaatta 53629541  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 39779342 - 39779390
Alignment:
Q  120 gaatataaatatatttaaccttaattcatatttcaattacaaatcaatt 168  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  39779342 gaatataaatatatttaacctaatttcatatttcaattacaaatcaatt 39779390  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 22320944 - 22320895
Alignment:
Q  121 aatataaatatatttaaccttaattcatatttcaattacaaatcaattat 170  Q
    |||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  22320944 aatataaatattgttaacctaatttcatatttcaattacaaatcaattat 22320895  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 32979616 - 32979567
Alignment:
Q  121 aatataaatatatttaaccttaattcatatttcaattacaaatcaattat 170  Q
    |||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  32979616 aatataaatattgttaacctaatttcatatttcaattacaaatcaattat 32979567  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 38628748 - 38628699
Alignment:
Q  121 aatataaatatatttaaccttaattcatatttcaattacaaatcaattat 170  Q
    |||||||||||  ||||||| | |||||||||||||||||||||||||||    
T  38628748 aatataaatattgttaacctaatttcatatttcaattacaaatcaattat 38628699  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 12761293 - 12761242
Alignment:
Q  121 aatataaatatatttaaccttaattcatatttcaattacaaatcaattattt 172  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  12761293 aatatgaatatatttaacctaatttcatatttcaattacaaatcaattattt 12761242  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 12760944 - 12760981
Alignment:
Q  133 tttaaccttaattcatatttcaattacaaatcaattat 170  Q
    |||||||| | |||||||||||||||||||||||||||    
T  12760944 tttaacctaatttcatatttcaattacaaatcaattat 12760981  T

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