View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_low_15 (Length: 250)
Name: NF2323_low_15
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 34708755 - 34708564
Alignment:
| Q |
1 |
taactcacacttgttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatggctactgggcaacaactataagaca |
100 |
Q |
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| T |
34708755 |
taactcacactagttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatggctactgggcaacaactataagaca |
34708656 |
T |
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| Q |
101 |
gtgatattgcattatgcggcacaattagattaacaatttgaatcccttaattttcttacatgattcagtctggcaatcaatgtcttctgtta |
192 |
Q |
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| T |
34708655 |
gtgatattgcattaagcggcacaattagattaacaatttgaatcccttaattttcttacatgattcagtcttgcaatcaatgtcttctgtta |
34708564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36581073 - 36580996
Alignment:
| Q |
1 |
taactcacacttgttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatggct |
78 |
Q |
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| T |
36581073 |
taactcacgctagttataattatgcaaaaatgacattgaaatcccaacgtgaattaactcaccttagttttcatggct |
36580996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 5406628 - 5406673
Alignment:
| Q |
144 |
cccttaattttcttacatgattcagtctggcaatcaatgtcttctg |
189 |
Q |
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| T |
5406628 |
cccttaatttttttacatgattcagtcttgcaatcactgtcttctg |
5406673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5060937 - 5061036
Alignment:
| Q |
1 |
taactcacacttgttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatggctactgggcaacaactataagaca |
100 |
Q |
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|
||||||||||| ||||||| |||||||||||||||||||||| |||| |||| ||||||||||||| ||||||| | | ||| |||||| ||||||||| |
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| T |
5060937 |
taactcacactagttataattctgcaaaaatcacattgaaattccaatgtgagttaactcacgttgattttcatagtcagtggacaacaaatataagaca |
5061036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37576663 - 37576729
Alignment:
| Q |
13 |
gttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatggcta |
79 |
Q |
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| T |
37576663 |
gttataattatgcaaaaatgacattgaaatctcaacgtgagttaactcatgttggttttcatggcta |
37576729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 33148926 - 33148987
Alignment:
| Q |
13 |
gttataaatctgcaaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcatg |
75 |
Q |
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| T |
33148926 |
gttataattctgcaaaaatgacattgaaatcc-aacgtgagttaactcacgttggttttcatg |
33148987 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 26997833 - 26997902
Alignment:
| Q |
31 |
tcacattgaaatcccaacgtgaattaactcacgttggttttcatggctactgggcaacaactataagaca |
100 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||||||||||| | ||||| || ||||||||| |
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|
| T |
26997833 |
tcacattgaaattccaacgtgagttaactcacattggttttcatggctagtaggcaataaatataagaca |
26997902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 4969995 - 4970034
Alignment:
| Q |
13 |
gttataaatctgcaaaaatcacattgaaatcccaacgtga |
52 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| |
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| T |
4969995 |
gttataattctgcaaaaatcacattaaaatcccaacgtga |
4970034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 26998248 - 26998205
Alignment:
| Q |
26 |
aaaaatcacattgaaatcccaacgtgaattaactcacgttggttt |
70 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||||||||||||| |
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|
| T |
26998248 |
aaaaatcacattgaa-taccaacgtgagttaactcacgttggttt |
26998205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 27039376 - 27039425
Alignment:
| Q |
25 |
caaaaatcacattgaaatcccaacgtgaattaactcacgttggttttcat |
74 |
Q |
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|
||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27039376 |
caaaaattacattgaaatcccaacgtgagttaactcacgttggttttcat |
27039425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 1826184 - 1826239
Alignment:
| Q |
34 |
cattgaaatcccaacgtgaattaactcacgttggttttcatggctactgggcaaca |
89 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| || || |||||| |
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|
| T |
1826184 |
catttaaatcccaacgtgagttaactcacgttggttttcatgggtagtgagcaaca |
1826239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 43996008 - 43996047
Alignment:
| Q |
13 |
gttataaatctgcaaaaatcacattgaaatcccaacgtga |
52 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||| |
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| T |
43996008 |
gttataattctgcaaaaatcacattgaaatctcaacgtga |
43996047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 2831474 - 2831430
Alignment:
| Q |
26 |
aaaaatcacattgaaatcccaacgtgaattaactcacgttggtttt |
71 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
2831474 |
aaaaatcacattgaa-tcccaacgtgagttaactcacgttgatttt |
2831430 |
T |
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