View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_low_16 (Length: 249)
Name: NF2323_low_16
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 1717124 - 1716916
Alignment:
| Q |
15 |
ttattctgattattatgtgtatgagtgaagatatttgtcagcataacattcaatttttccgagcatcattgttaaacaaaatggtttctagcagtatttg |
114 |
Q |
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| T |
1717124 |
ttattctgattattatgtgtaggagtgaagatatttgtgagcataacattcaatttttccgagcatcattgttaaacaaaatggtttctagcagtctttg |
1717025 |
T |
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| Q |
115 |
tggct-gtcttggagaagtgtatgtatgattccaattaatctactttagttttagagctgatatttaattccaaaagtggtattacacttcatgaggcac |
213 |
Q |
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| T |
1717024 |
tggctggccttggagaa----atgtatgattccaattaagctactttagttttagagctgatatttaattccagaagtgatataacacttcatgaggcac |
1716929 |
T |
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| Q |
214 |
ttgtttgagcggc |
226 |
Q |
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| T |
1716928 |
ttgtttgagcggc |
1716916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 42221835 - 42221698
Alignment:
| Q |
15 |
ttattctgattattatgtgtatgagtgaagatatttgtcagcataacattcaatttttccgagcatcattgttaaacaaaatggtttctagcagtatttg |
114 |
Q |
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| T |
42221835 |
ttattctgattattatgtgtatgagtgaagatatttgtcagcataacattcaatttttccgagcatcattgttaaacaaaatggtttctagcagtatttg |
42221736 |
T |
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| Q |
115 |
tggctg-tcttggagaagtgtatgtatgattccaatta |
151 |
Q |
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| T |
42221735 |
tggctgatcttggagaagtgtatgtatgatttcaatta |
42221698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 42221514 - 42221428
Alignment:
| Q |
143 |
ttccaattaatctactttagttttagagctgatatttaattccaaaagtggtattacacttcatgaggcacttgtttgagcggcgtc |
229 |
Q |
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| T |
42221514 |
ttccaattaagctactttagttttagagctgatatttaattccaaaagtgatattacacttcatgaggcacttgtttgagcggcgtc |
42221428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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