View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2323_low_2 (Length: 632)
Name: NF2323_low_2
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 567
Target Start/End: Complemental strand, 14515022 - 14514461
Alignment:
| Q |
12 |
agatgaagttggatgaacggtattgtgcatatttttatgaaaatttactattaaagcttcttaaacagtgcatcggatgcattcgttaatatttctcatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||| | ||| ||||||| |||||||||| |
|
|
| T |
14515022 |
agatgaagttggatgaacggtattgtgcatatttttat-aaaatttactattaaagttgcttaaagagtgcatcaggggcactcgttaacatttctcatg |
14514924 |
T |
|
| Q |
112 |
taaggataatatgtgagacgcctttaactttcgagaaggacacttccagtttcaaaagaaaacataaaaactaacggatttttagaattgtgtaggatgg |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14514923 |
taaggataatatgtgagacgtctttaactttcgagaagaacacttcccgttccaaaagaaaacataaaaactaacggatttttagaattgtgtagaatgg |
14514824 |
T |
|
| Q |
212 |
ggaaaaagaaatgctaattttcacacatagaggtacattaa-tttgggcataggatgtcgttagttttttgcattcaaaagatttcttcaatc--gactt |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14514823 |
g-aaaaagaaatgctaattttcacacatagaggtgcattaaatttgggcataggatgtcgttagttttttgcattcaaaagatttcttcaatctcgactt |
14514725 |
T |
|
| Q |
309 |
taaaatcttcatgaactaatgccttagattgcttgatgaaaattatatgttcattctcacatctaaaattataaatctttgcaagtaattgagcaagtac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
14514724 |
taaaatcttcatgaactaatgccttagattgcttgtcgaaaattatatgttcattctcacatctaaaattacaaatctttgcaagtaattgtgcaagtac |
14514625 |
T |
|
| Q |
409 |
aaactcaagcttgttttgctaacaatattttatgggatatttac-gaaaatatgtgtattcacgttgaaatcgaaatatttgacttattttagaatgttt |
507 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14514624 |
aaactcaagcttgttttgctaacaataatttatgggatatttacaaaaaatgtgtgtattcacgttgaaatcgaaatatttgacttattttagaatgttt |
14514525 |
T |
|
| Q |
508 |
aaaaaatgtttctaaacatttga----taatttatataagtattcattatgtttgaatccaatt |
567 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14514524 |
aaaaaatgtttccaaacatttgataactaatttatataagtattcattatgtttgaatccaatt |
14514461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 587 - 632
Target Start/End: Complemental strand, 14514459 - 14514414
Alignment:
| Q |
587 |
cgtctaaagccaaaaaatatgtaatgagatgaaatcaaacttcaca |
632 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
14514459 |
cgtctaaagccaaaaaatatataatgagacgaaatcaaacttcaca |
14514414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 519
Target Start/End: Original strand, 31901896 - 31901925
Alignment:
| Q |
490 |
acttattttagaatgtttaaaaaatgtttc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31901896 |
acttattttagaatgtttaaaaaatgtttc |
31901925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 503
Target Start/End: Original strand, 46684608 - 46684636
Alignment:
| Q |
475 |
aaatcgaaatatttgacttattttagaat |
503 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46684608 |
aaatcgaaatatttgacttattttagaat |
46684636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University