View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2323_low_20 (Length: 235)

Name: NF2323_low_20
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2323_low_20
NF2323_low_20
[»] chr4 (30 HSPs)
chr4 (36-235)||(598536-598736)
chr4 (24-100)||(44792614-44792690)
chr4 (14-100)||(44791713-44791799)
chr4 (169-223)||(290424-290478)
chr4 (169-223)||(44792034-44792088)
chr4 (29-122)||(3654471-3654564)
chr4 (14-86)||(30573701-30573773)
chr4 (29-81)||(32089610-32089662)
chr4 (14-98)||(47688459-47688543)
chr4 (14-100)||(31329695-31329782)
chr4 (14-82)||(20774176-20774245)
chr4 (30-82)||(40348139-40348191)
chr4 (14-74)||(44469481-44469541)
chr4 (14-82)||(53147860-53147928)
chr4 (29-96)||(47687913-47687980)
chr4 (30-81)||(52871303-52871354)
chr4 (12-79)||(2446160-2446228)
chr4 (29-73)||(7842534-7842578)
chr4 (24-92)||(24158806-24158874)
chr4 (29-73)||(26147037-26147081)
chr4 (29-73)||(40347558-40347602)
chr4 (29-96)||(55976937-55977004)
chr4 (14-71)||(40495083-40495141)
chr4 (14-72)||(53772796-53772854)
chr4 (24-73)||(24374788-24374837)
chr4 (32-73)||(56263077-56263118)
chr4 (13-53)||(1465308-1465348)
chr4 (29-73)||(24551928-24551972)
chr4 (29-73)||(55000691-55000735)
chr4 (29-73)||(56262482-56262526)
[»] chr1 (28 HSPs)
chr1 (14-223)||(12761354-12761560)
chr1 (14-183)||(37852511-37852681)
chr1 (29-163)||(12760779-12760913)
chr1 (29-122)||(17172618-17172711)
chr1 (29-96)||(34309212-34309279)
chr1 (14-86)||(25469078-25469150)
chr1 (15-73)||(19172580-19172639)
chr1 (29-96)||(24991973-24992040)
chr1 (14-73)||(28181521-28181580)
chr1 (29-99)||(17171934-17172004)
chr1 (14-86)||(25468497-25468570)
chr1 (14-73)||(7406232-7406292)
chr1 (29-73)||(13262836-13262880)
chr1 (14-62)||(36689081-36689129)
chr1 (14-62)||(36705181-36705229)
chr1 (29-73)||(47967865-47967909)
chr1 (14-73)||(19171766-19171825)
chr1 (29-92)||(27256698-27256761)
chr1 (29-92)||(34308476-34308539)
chr1 (29-79)||(11704807-11704857)
chr1 (14-76)||(46909364-46909426)
chr1 (29-79)||(49680814-49680864)
chr1 (36-73)||(30931898-30931935)
chr1 (29-73)||(4433852-4433896)
chr1 (14-54)||(26118661-26118701)
chr1 (14-62)||(30932811-30932859)
chr1 (14-54)||(36389763-36389803)
chr1 (29-73)||(36390372-36390416)
[»] chr7 (37 HSPs)
chr7 (14-223)||(45099126-45099332)
chr7 (14-73)||(18977774-18977833)
chr7 (14-96)||(37949593-37949675)
chr7 (14-73)||(7668470-7668529)
chr7 (29-96)||(30661437-30661504)
chr7 (14-96)||(19067625-19067707)
chr7 (14-96)||(21496965-21497047)
chr7 (14-72)||(37706416-37706474)
chr7 (14-79)||(46428816-46428881)
chr7 (16-87)||(15305231-15305303)
chr7 (29-96)||(47719686-47719753)
chr7 (29-62)||(23901110-23901143)
chr7 (14-79)||(30660581-30660646)
chr7 (29-122)||(31278110-31278203)
chr7 (14-74)||(38225287-38225348)
chr7 (29-73)||(1417611-1417655)
chr7 (29-73)||(3029203-3029247)
chr7 (24-96)||(25599020-25599092)
chr7 (29-73)||(27948449-27948493)
chr7 (29-73)||(38225980-38226024)
chr7 (29-92)||(19068381-19068444)
chr7 (14-73)||(25342485-25342544)
chr7 (18-73)||(25343244-25343299)
chr7 (29-72)||(37395505-37395548)
chr7 (14-72)||(45099899-45099958)
chr7 (29-96)||(45161972-45162039)
chr7 (15-73)||(46428175-46428234)
chr7 (30-73)||(48669804-48669847)
chr7 (33-96)||(48670909-48670972)
chr7 (14-72)||(24719323-24719381)
chr7 (29-79)||(37950466-37950516)
chr7 (24-73)||(26636101-26636150)
chr7 (29-82)||(40273563-40273616)
chr7 (29-73)||(3772531-3772575)
chr7 (29-73)||(13785598-13785642)
chr7 (29-73)||(25343306-25343350)
chr7 (39-99)||(31277436-31277496)
[»] chr8 (20 HSPs)
chr8 (24-223)||(32979677-32979877)
chr8 (24-146)||(26652292-26652414)
chr8 (46-223)||(38628809-38628987)
chr8 (24-100)||(39779818-39779894)
chr8 (24-92)||(39778917-39778985)
chr8 (103-223)||(22321005-22321126)
chr8 (14-81)||(37064805-37064872)
chr8 (169-223)||(39779228-39779282)
chr8 (14-74)||(27442144-27442205)
chr8 (14-86)||(31642078-31642151)
chr8 (14-73)||(9197824-9197883)
chr8 (14-82)||(9197083-9197152)
chr8 (14-73)||(41974628-41974688)
chr8 (14-73)||(17725658-17725717)
chr8 (36-99)||(31602027-31602090)
chr8 (24-86)||(31641510-31641572)
chr8 (29-62)||(27441470-27441503)
chr8 (14-73)||(3165126-3165186)
chr8 (29-73)||(11686230-11686274)
chr8 (29-73)||(38576306-38576350)
[»] chr3 (34 HSPs)
chr3 (14-162)||(33277420-33277568)
chr3 (24-162)||(10847290-10847428)
chr3 (24-183)||(44029664-44029823)
chr3 (81-164)||(53629318-53629400)
chr3 (14-73)||(37988223-37988283)
chr3 (14-86)||(48765062-48765134)
chr3 (14-86)||(48764465-48764538)
chr3 (24-96)||(14871152-14871224)
chr3 (14-73)||(27082764-27082824)
chr3 (14-73)||(20213536-20213595)
chr3 (29-100)||(48649151-48649222)
chr3 (14-100)||(41458022-41458107)
chr3 (14-87)||(48648191-48648265)
chr3 (31-96)||(981673-981738)
chr3 (14-82)||(20212968-20213037)
chr3 (14-73)||(13477045-13477105)
chr3 (24-100)||(37987232-37987308)
chr3 (24-72)||(52605489-52605537)
chr3 (14-73)||(264455-264514)
chr3 (29-96)||(17603943-17604010)
chr3 (36-82)||(13477774-13477820)
chr3 (66-120)||(44701377-44701431)
chr3 (14-72)||(55373712-55373770)
chr3 (31-76)||(11203203-11203248)
chr3 (28-73)||(46149632-46149677)
chr3 (36-81)||(48413330-48413375)
chr3 (14-87)||(51827485-51827558)
chr3 (17-73)||(265103-265159)
chr3 (29-73)||(17603172-17603216)
chr3 (29-73)||(21727534-21727578)
chr3 (14-73)||(31115604-31115664)
chr3 (29-73)||(37520566-37520610)
chr3 (24-52)||(37682096-37682124)
chr3 (29-73)||(48507037-48507081)
[»] chr6 (13 HSPs)
chr6 (24-100)||(8489257-8489333)
chr6 (14-100)||(33436251-33436337)
chr6 (14-99)||(26529491-26529576)
chr6 (14-99)||(10171263-10171349)
chr6 (14-72)||(20833972-20834030)
chr6 (29-98)||(3623178-3623247)
chr6 (29-82)||(8488472-8488525)
chr6 (29-73)||(12344897-12344941)
chr6 (17-73)||(19311831-19311887)
chr6 (29-73)||(19323771-19323815)
chr6 (29-96)||(3623728-3623795)
chr6 (14-73)||(10171970-10172029)
chr6 (29-73)||(26528826-26528870)
[»] chr2 (27 HSPs)
chr2 (29-100)||(11751046-11751117)
chr2 (14-73)||(1296368-1296427)
chr2 (29-98)||(18174649-18174718)
chr2 (14-74)||(22301182-22301243)
chr2 (29-122)||(27178600-27178693)
chr2 (14-82)||(11750246-11750314)
chr2 (14-88)||(8542537-8542612)
chr2 (29-96)||(18174103-18174170)
chr2 (14-73)||(22301874-22301933)
chr2 (16-73)||(9276334-9276392)
chr2 (29-99)||(27177916-27177986)
chr2 (24-73)||(18820431-18820480)
chr2 (14-95)||(24754976-24755057)
chr2 (29-73)||(9540335-9540379)
chr2 (14-54)||(18821254-18821294)
chr2 (29-73)||(29513151-29513195)
chr2 (14-76)||(6584228-6584291)
chr2 (14-57)||(20632930-20632973)
chr2 (14-96)||(24121271-24121354)
chr2 (14-104)||(8541740-8541830)
chr2 (14-96)||(23343768-23343850)
chr2 (28-62)||(26752738-26752772)
chr2 (24-73)||(26752026-26752075)
chr2 (36-73)||(29559424-29559461)
chr2 (29-73)||(1297127-1297171)
chr2 (29-73)||(9275590-9275634)
chr2 (29-73)||(29719450-29719494)
[»] chr5 (26 HSPs)
chr5 (14-96)||(17071775-17071857)
chr5 (29-98)||(17071227-17071296)
chr5 (29-98)||(34600264-34600333)
chr5 (29-96)||(235595-235662)
chr5 (29-96)||(1281839-1281906)
chr5 (14-73)||(4084868-4084927)
chr5 (14-73)||(29046017-29046076)
chr5 (29-96)||(34600812-34600879)
chr5 (14-72)||(234689-234747)
chr5 (14-72)||(14478909-14478967)
chr5 (14-95)||(19128757-19128839)
chr5 (14-96)||(29087913-29087995)
chr5 (14-74)||(25858197-25858258)
chr5 (29-73)||(1554087-1554131)
chr5 (24-72)||(19360481-19360529)
chr5 (29-96)||(236910-236977)
chr5 (14-72)||(237826-237885)
chr5 (14-72)||(19359691-19359750)
chr5 (28-79)||(36038697-36038748)
chr5 (37-74)||(1553419-1553456)
chr5 (14-62)||(28705894-28705943)
chr5 (29-73)||(6476795-6476839)
chr5 (29-73)||(7632098-7632142)
chr5 (14-73)||(22799764-22799824)
chr5 (14-62)||(33471104-33471152)
chr5 (36-96)||(34709018-34709078)
[»] scaffold0086 (1 HSPs)
scaffold0086 (29-73)||(8296-8340)
[»] scaffold0176 (1 HSPs)
scaffold0176 (14-76)||(26579-26642)
[»] scaffold2007 (1 HSPs)
scaffold2007 (14-73)||(738-798)
[»] scaffold1207 (1 HSPs)
scaffold1207 (14-73)||(1575-1634)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-73)||(428906-428965)
[»] scaffold0418 (1 HSPs)
scaffold0418 (14-71)||(6891-6949)
[»] scaffold0085 (2 HSPs)
scaffold0085 (14-72)||(22076-22134)
scaffold0085 (36-73)||(15863-15900)
[»] scaffold0093 (1 HSPs)
scaffold0093 (29-82)||(23724-23777)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 598536 - 598736
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaacaatgtatgtaaac 135  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||    
T  598536 ttgacaccagatgtcaacgaattcgttaacaccaaatcacatccgttgatttaatttaacccaaagactcttgttaattcacttaacaatgcatgtgaac 598635  T
Q  136 catcgcctacttgatcttttattccatgg--cttccatctccttcccgtggttgcacatactcaaacatttctccaatctaatgtgctgcaacaatacat 233  Q
    |||| ||||| ||||||||||||||||||   || ||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  598636 catcacctacatgatcttttattccatggttttttcatctcctt-cagtgtttgcacatgctcaaacatttctccaatctaatgtgctgcaacaatacat 598734  T
Q  234 aa 235  Q
    ||    
T  598735 aa 598736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 44792690 - 44792614
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  44792690 agtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaa 44792614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 44791713 - 44791799
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    ||||||| | |||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  44791713 atatataaagagtcaggatccattggcaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaa 44791799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 290424 - 290478
Alignment:
Q  169 catctccttcccgtggttgcacatactcaaacatttctccaatctaatgtgctgc 223  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  290424 catctccttcccgtgtttgcacatgctcaaacatttcaccaatctaatgtgctgc 290478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 44792034 - 44792088
Alignment:
Q  169 catctccttcccgtggttgcacatactcaaacatttctccaatctaatgtgctgc 223  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||    
T  44792034 catctccttcccgtgtttgcacatgctcaaacatttcaccaatctaatgtgctgc 44792088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 3654564 - 3654471
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaac 122  Q
    |||||| ||||| ||||||||||||| ||||||| | |||||||||  ||| ||||||| |||| ||||||   ||||||||||||||||||||    
T  3654564 ggatccgttgacgccaggtgtcaacggattcgttgacaccaaatcatgtcccttgatttcatttgatccaatggctcttgttaattcacttaac 3654471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 30573773 - 30573701
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | |||||||| || |||| ||||    
T  30573773 atatatatagagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtcgatt 30573701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 32089662 - 32089610
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgt 81  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||    
T  32089662 ggatccgttgacaccagatgtcaacgaattcgttgataccaaatcacatccgt 32089610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 47688543 - 47688459
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatcca 98  Q
    ||||||||| |||  |||||| ||||||||||||||||||| ||||||| | |||||||| || ||||| |||| ||||||||||    
T  47688543 atatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtttattttatttaatcca 47688459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 31329782 - 31329695
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||||| ||||||||  | || ||||||| |||| |||||||    
T  31329782 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttaacaccaaatcctaaccattgatttcatttgatccaaa 31329695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 20774245 - 20774176
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||||| | |||||||| || |||||    
T  20774245 atatatatatgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtt 20774176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 40348191 - 40348139
Alignment:
Q  30 gatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| || |||||    
T  40348191 gatccgttgacaccaggtgtcaatgaattcgttaataccaaatctcaaccgtt 40348139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 44469481 - 44469541
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatca 74  Q
    ||||||||||||||  |||||  |||||||||||||||||||||||||| | |||||||||    
T  44469481 atatatatatagtcatgatccgatgacaccaggtgtcaacgaattcgttgacaccaaatca 44469541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 53147860 - 53147928
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    ||||||||||| || ||||||||||||||||| |||||||| ||||||| | |||||||| || |||||    
T  53147860 atatatatataatcaggatccattgacaccagatgtcaacggattcgttgacaccaaatcccaaccgtt 53147928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 47687913 - 47687980
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||| |||||||||||||| |||||||||||| | |||||||| || ||||| |||| ||||||||    
T  47687913 ggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 47687980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 52871303 - 52871354
Alignment:
Q  30 gatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgt 81  Q
    ||||| ||||||||||||||||||| ||||||| | ||||||||||||||||    
T  52871303 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatcacatccgt 52871354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 2446228 - 2446160
Alignment:
Q  12 caatatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    |||||||||||| |||  |||||| ||||||||||||||||||  ||||||||| |||||||| |||||    
T  2446228 caatatatatatgagttaggatccgttgacaccaggtgtcaacagattcgttaacaccaaatctcatcc 2446160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 7842578 - 7842534
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||| |||||||||||||||||||| | ||||||||    
T  7842578 ggatccattgacatcaggtgtcaacgaattcgttgacaccaaatc 7842534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 24158874 - 24158806
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaattt 92  Q
    |||| |||||||||||||||||||||||||  ||||||| | ||||||||  | |||||||||| ||||    
T  24158874 agtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcattt 24158806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 26147081 - 26147037
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  26147081 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 26147037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 40347558 - 40347602
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||||||||||||||||||| |||| | ||||||||    
T  40347558 ggatccattgacaccaggtgtcaacgaatccgtttacaccaaatc 40347602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 55977004 - 55976937
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||| ||||||||||||||||| ||||||| | ||||||||  |  |||| |||||||||||||    
T  55977004 ggatccatcgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatc 55976937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 40495083 - 40495141
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaa 71  Q
    |||||||||| |||| |||||| |||||||||||||||||| |||||||| | ||||||    
T  40495083 atatatatatgagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 40495141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 53772796 - 53772854
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    ||||||||| |||  |||||| ||||||||||||||||||| ||||||| | |||||||    
T  53772796 atatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 53772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 24374788 - 24374837
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||| |||||| |||||||||| |||||||||||||||| | ||||||||    
T  24374788 agtcaggatccgttgacaccagctgtcaacgaattcgttgacaccaaatc 24374837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 56263118 - 56263077
Alignment:
Q  32 tccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||| |||| | ||||||||    
T  56263118 tccattgacaccaggtgtcaacgaatccgtttacaccaaatc 56263077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1465308 - 1465348
Alignment:
Q  13 aatatatatatagtcgggatccattgacaccaggtgtcaac 53  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  1465308 aatatatatagagtcaggatccgttgacaccaggtgtcaac 1465348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 24551972 - 24551928
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||| ||| ||| | ||||||||    
T  24551972 ggatccattgacaccaggtgtcaacggatttgttgacaccaaatc 24551928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 55000691 - 55000735
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||||||| |||||||| ||||||| | ||||||||    
T  55000691 ggatccattgacaccagatgtcaacggattcgttgacaccaaatc 55000735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 56262482 - 56262526
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||| ||||||||| | ||||||||    
T  56262482 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatc 56262526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 12761560 - 12761354
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaat 113  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12761560 atatatatatagttaggatccattggcaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgatttaatttaatccaaagactcttgttaat 12761461  T
Q  114 tcacttaacaatgtatgtaaaccatcgcctacttgatcttttattccatg-gcttccatctccttcccgtggttgcacatactcaaacatttctccaatc 212  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||||||||  ||||||||||||| ||    |||||||| |||||||||||| ||||||    
T  12761460 tcacttaacaatgcatgtgaaccatcgcctacatgatcttttattccatgatcttccatctcctttcc----ttgcacatgctcaaacatttcaccaatc 12761365  T
Q  213 taatgtgctgc 223  Q
    || ||| ||||    
T  12761364 tattgtactgc 12761354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 37852511 - 37852681
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaat 113  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||    
T  37852511 atatatatatagtcaggatccgttgacacctggtgtcaacgaattcgttaacaccaaatcacatccgttgatttaatttaatccaatggctcttgttaat 37852610  T
Q  114 tcacttaacaatgtatgtaaaccatcgcctacttgatcttttattccat-ggcttccatctccttcccgtg 183  Q
    |||||||| |||| |||| ||||||| ||||| |||||||||||||||| |  ||||||||||||||||||    
T  37852611 tcacttaataatgcatgtgaaccatcacctacatgatcttttattccatagttttccatctccttcccgtg 37852681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 12760779 - 12760913
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaacaatgta 128  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||  ||||||  |||||||| ||||||| |    
T  12760779 ggatccgttgacacctggtgtcaacgaattcgttaacatcaaatcacatccgttgatttaatttaatccaaaggctcttgaaaattcactaaacaatgca 12760878  T
Q  129 tgtaaaccatcgcctacttgatcttttattccatg 163  Q
    ||| ||||||||||||| ||||||||| |||||||    
T  12760879 tgtgaaccatcgcctacatgatcttttgttccatg 12760913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 17172711 - 17172618
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaac 122  Q
    |||||| ||||||||||||||||||| ||||||| |  ||||||||  ||| ||||||| |||| ||||||   ||||||||||||||||||||    
T  17172711 ggatccgttgacaccaggtgtcaacggattcgttgacgccaaatcatgtcccttgatttcatttgatccaatggctcttgttaattcacttaac 17172618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 34309279 - 34309212
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||| || |||||||||| ||||||||    
T  34309279 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 34309212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 25469150 - 25469078
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||| | ||||||||  | |||||||||    
T  25469150 atatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgttgatt 25469078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 19172639 - 19172580
Alignment:
Q  15 tatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||||||| | ||||||||    
T  19172639 tatatatatgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 24991973 - 24992040
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||| |  |||| |||| ||||||||    
T  24991973 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatcataaacgttcatttcatttaatc 24992040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 28181521 - 28181580
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||  |||||| |||||||| |||||||||||||||||| | ||||||||    
T  28181521 atatatatatagtgaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatc 28181580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 17171934 - 17172004
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaa 99  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| |  ||| ||||||| |||| ||||||    
T  17171934 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaattatgtcccttgatttgatttgatccaa 17172004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 25468497 - 25468570
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||| || | |||||||| || |||| ||||    
T  25468497 atatatatatgagtcaggatccattgacaccaggtgtcaacggattcattgacaccaaatctcaaccgtcgatt 25468570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 7406232 - 7406292
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| |||||| |||||||||||||| |||||||||||| | ||||||||    
T  7406232 atatatatatgagtcaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 7406292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 13262836 - 13262880
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  13262836 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 13262880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 36689129 - 36689081
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| ||||    
T  36689129 atatatatatagtcaggattcattgacaccaggtgttaacgaatccgtt 36689081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 36705229 - 36705181
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    |||||||||||||| |||| |||||||||||||||| ||||||| ||||    
T  36705229 atatatatatagtcaggattcattgacaccaggtgttaacgaatccgtt 36705181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 47967865 - 47967909
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||    
T  47967865 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 47967909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 19171766 - 19171825
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| ||||||||||| |||||| || ||||||||| ||||||| | ||||||||    
T  19171766 atatatatagagtcgggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 19171825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 27256761 - 27256698
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaattt 92  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||  || |||||||||| ||||    
T  27256761 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaaccgttgattttattt 27256698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 34308476 - 34308539
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaattt 92  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||  || |||||||||| ||||    
T  34308476 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaaccgttgattttattt 34308539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 11704857 - 11704807
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    |||||||||||||||| ||||||||| ||||||| | |||||||| |||||    
T  11704857 ggatccattgacaccaagtgtcaacggattcgttgacaccaaatctcatcc 11704807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 46909426 - 46909364
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcaca 76  Q
    |||||||||||||| |||||| |||||||||| |||||||  |||| || | |||||||||||    
T  46909426 atatatatatagtcaggatccgttgacaccagatgtcaacagattcattgacaccaaatcaca 46909364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 49680814 - 49680864
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||| |||||    
T  49680814 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatcc 49680864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 30931898 - 30931935
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  30931898 ttgacaccaggtgtcaacggattcgttaacaccaaatc 30931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 4433896 - 4433852
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  4433896 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 4433852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 26118661 - 26118701
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacg 54  Q
    |||||||||||||| |||||| |||||||||| ||||||||    
T  26118661 atatatatatagtcaggatccgttgacaccagatgtcaacg 26118701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 30932859 - 30932811
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    ||||||||| |||  |||||| ||||||||||||||||||| |||||||    
T  30932859 atatatatagagtgaggatccgttgacaccaggtgtcaacggattcgtt 30932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 36389763 - 36389803
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacg 54  Q
    |||||||||||||| |||||| |||||||| ||||||||||    
T  36389763 atatatatatagtcaggatccgttgacacctggtgtcaacg 36389803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 36390416 - 36390372
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| |||||||||||||||||||||| |||| | ||||||||    
T  36390416 ggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 45099126 - 45099332
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaat 113  Q
    |||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||    
T  45099126 atatatatatagtcaggatccgttgacatcaggtgtcaacgaattcgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaat 45099225  T
Q  114 tcacttaacaatgtatgtaaaccatcgcctacttgatcttttattccatgg-cttccatctccttcccgtggttgcacatactcaaacatttctccaatc 212  Q
    ||||||||||||| | || ||||||| ||||| ||||||||||||||||||  |||||||    | ||||| |||||||| |||||| ||||| ||||||    
T  45099226 tcacttaacaatgcacgtgaaccatcacctacatgatcttttattccatggttttccatc----ttccgtgcttgcacattctcaaaaatttcaccaatc 45099321  T
Q  213 taatgtgctgc 223  Q
    |||||||||||    
T  45099322 taatgtgctgc 45099332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18977833 - 18977774
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  18977833 atatatatatagtcaggatccattgacaccaggtgtcaacggattcgttaacaccaaatc 18977774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 37949593 - 37949675
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||||| || | |||||| ||||||||||||||||||| ||||||| | |||||||| || |||||||||| ||||||||    
T  37949593 atatatatagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 37949675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 7668470 - 7668529
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  7668470 atatatatatagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 7668529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 30661504 - 30661437
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||| || |||||||||| ||||||||    
T  30661504 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 30661437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 19067625 - 19067707
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||  | |||||| ||||||||| ||||||||| ||||||| | |||||||| || |||||||||| ||||||||    
T  19067625 atatatatatatacaggatccgttgacaccacgtgtcaacggattcgttgacaccaaatctcaaccgttgattttatttaatc 19067707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 21497047 - 21496965
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||||||| || |||||| |||||| |||||||||||||||||||| | |||||||| || ||||| || | ||||||||    
T  21497047 atatatatataatcaggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctcaaccgtttatctcatttaatc 21496965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 37706416 - 37706474
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    ||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |||||||    
T  37706416 atatatatagagtcaggatccattgacaccaggtatcaacggattcgttaacaccaaat 37706474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 46428881 - 46428816
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||||| | | |||||| |||||    
T  46428881 atatatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatctcatcc 46428816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 15305303 - 15305231
Alignment:
Q  16 atatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgattt 87  Q
    |||||||| |||| ||||||||||||| |||||||||| ||||||||| | ||||||||||||| ||| ||||    
T  15305303 atatatatgagtcaggatccattgacatcaggtgtcaatgaattcgttgacaccaaatcacatctgtttattt 15305231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 47719753 - 47719686
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||  |  |||| |||||||||||||    
T  47719753 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatc 47719686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 23901143 - 23901110
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    ||||||||||||||||||||||||||||||||||    
T  23901143 ggatccattgacaccaggtgtcaacgaattcgtt 23901110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 30660581 - 30660646
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    ||||||||| |||  |||||| ||||||||||||||||||| ||||||| | |||||||| |||||    
T  30660581 atatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatcc 30660646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 31278203 - 31278110
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaac 122  Q
    |||||| |||||||||| |||||||| ||||||| | |||||||||  ||| ||||||| |||| |||  |   ||||||||||||||||||||    
T  31278203 ggatccgttgacaccagatgtcaacggattcgttgacaccaaatcatgtcccttgatttcatttgatcggatggctcttgttaattcacttaac 31278110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 38225287 - 38225348
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatca 74  Q
    |||||||||| ||||  ||||| |||||||||||||||||||||| |||||| |||||||||    
T  38225287 atatatatatgagtcatgatccgttgacaccaggtgtcaacgaatccgttaacaccaaatca 38225348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 1417611 - 1417655
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  1417611 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 1417655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 3029247 - 3029203
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  3029247 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 25599020 - 25599092
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||| |||||| ||||||||||||||||||| ||||||| | |||||||| ||  ||||||| | ||||||||    
T  25599020 agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaatcgttgatcttatttaatc 25599092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 27948449 - 27948493
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  27948449 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 27948493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 38226024 - 38225980
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  38226024 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 38225980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 19068444 - 19068381
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaattt 92  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||  || |||||||||| ||||    
T  19068444 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatttcaaccgttgattttattt 19068381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25342485 - 25342544
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||  |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  25342485 atatatatagagttaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 25342544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 25343299 - 25343244
Alignment:
Q  18 atatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||| |||| |||||| ||||||||||||||||| ||||||||| | ||||||||    
T  25343299 atatagagtcaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatc 25343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 37395548 - 37395505
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||| ||||||||||||||||||| ||||||||| |||||||    
T  37395548 ggatccgttgacaccaggtgtcaacggattcgttaacaccaaat 37395505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 45099958 - 45099899
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||    
T  45099958 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 45099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 45161972 - 45162039
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||||||||||||||||| |||| ||||||| | |||||||| || | |||||| | ||||||||    
T  45161972 ggatccattgacaccaggtgttaacggattcgttgacaccaaatctcaactgttgatcttatttaatc 45162039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 46428175 - 46428234
Alignment:
Q  15 tatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  46428175 tatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 46428234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 48669804 - 48669847
Alignment:
Q  30 gatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||||||| |||  ||||||||    
T  48669804 gatccattgacaccaggtgtcaacgaattcattaccaccaaatc 48669847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 48670972 - 48670909
Alignment:
Q  33 ccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||||||||||||||| ||| | |||||||| ||||| || ||||  |||||||    
T  48670972 ccattgacaccaggtgtcaacgaatttgttcacaccaaatctcatccattaatttgttttaatc 48670909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 24719323 - 24719381
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||||||||||  |||||| |||||||||| |||||||| ||||||| | |||||||    
T  24719323 atatatatatagttaggatccgttgacaccagatgtcaacggattcgttgacaccaaat 24719381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 37950516 - 37950466
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    |||||| ||||||||||||||||||| ||||||| | |||||||| |||||    
T  37950516 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcatcc 37950466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26636101 - 26636150
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||| |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  26636101 agtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 26636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 40273563 - 40273616
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    |||||| ||||||||||||||||| ||||||||| | |||||||| || |||||    
T  40273563 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctcaaccgtt 40273616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 3772575 - 3772531
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  3772575 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatc 3772531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 13785642 - 13785598
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  13785642 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 13785598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 25343306 - 25343350
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  25343306 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 25343350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 31277436 - 31277496
Alignment:
Q  39 acaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaa 99  Q
    |||||||||||||||||||||||| | ||||||| |  ||| ||||||| |||| ||||||    
T  31277436 acaccaggtgtcaacgaattcgttgacaccaaattatgtcccttgatttgatttgatccaa 31277496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 32979877 - 32979677
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaaca 123  Q
    |||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  32979877 agtcaggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatcacatccattgatttaatttaatccaaaggctcttgttaattcacttaaca 32979778  T
Q  124 atgtatgtaaaccatcgcctacttgatcttttattccatgg-cttccatctccttcccgtggttgcacatactcaaacatttctccaatctaatgtgctg 222  Q
    ||| |||| ||||||| ||||| ||||||||||||| ||||  |||||||| ||||  ||| |||||||| |||||| ||||| ||||||||||||||||    
T  32979777 atgcatgtgaaccatcacctacatgatcttttattctatggttttccatcttcttcatgtgcttgcacattctcaaagatttcaccaatctaatgtgctg 32979678  T
Q  223 c 223  Q
    |    
T  32979677 c 32979677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 26652292 - 26652414
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaaca 123  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||  |||||||||||||||||||||    
T  26652292 agtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacattcattgattcaatttaatccaaaggctcttgttaattcacttaaca 26652391  T
Q  124 atgtatgtaaaccatcgcctact 146  Q
    ||| |||| ||||||||||||||    
T  26652392 atgcatgtgaaccatcgcctact 26652414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 38628987 - 38628809
Alignment:
Q  46 gtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaacaatgtatgtaaaccatcgcctac 145  Q
    |||||||||||||||||||   |||||||||||| | ||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||  ||| |||||    
T  38628987 gtgtcaacgaattcgttaacgtcaaatcacatccatcgatttaatttaattcaaaagctcttgttaattcacttaataatgtatgtgaattatcacctac 38628888  T
Q  146 ttgatcttttattccatgg-cttccatctccttcccgtggttgcacatactcaaacatttctccaatctaatgtgctgc 223  Q
     ||||||||||||||||||  |||||||| ||||| ||| |||||||| |||||| ||||| |||||| | ||||||||    
T  38628887 atgatcttttattccatggttttccatcttcttcctgtgcttgcacattctcaaagatttcaccaatcaattgtgctgc 38628809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 39779894 - 39779818
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  39779894 agtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaa 39779818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 39778917 - 39778985
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaattt 92  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  39778917 agtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttattt 39778985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 22321126 - 22321005
Alignment:
Q  103 ctcttgttaattcacttaacaatgtatgtaaaccatcgcctacttgatcttttattccatgg-cttccatctccttcccgtggttgcacatactcaaaca 201  Q
    ||||||||||||||||||| |||| |||| ||||||| ||||| ||||||||||||| ||||  || ||||| ||||  ||| |||||||| |||||| |    
T  22321126 ctcttgttaattcacttaataatgcatgtgaaccatcacctacatgatcttttattctatggtttttcatcttcttcatgtgcttgcacattctcaaaga 22321027  T
Q  202 tttctccaatctaatgtgctgc 223  Q
    |||| | |||||||||||||||    
T  22321026 tttcacaaatctaatgtgctgc 22321005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 37064805 - 37064872
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgt 81  Q
    |||||||||||||| |||||  |||||||||||||||||||||||| || | ||||||||||| ||||    
T  37064805 atatatatatagtcaggatctgttgacaccaggtgtcaacgaattcattgacaccaaatcacaaccgt 37064872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 39779228 - 39779282
Alignment:
Q  169 catctccttcccgtggttgcacatactcaaacatttctccaatctaatgtgctgc 223  Q
    ||||||||||||||| |||||||| ||||||||| || |||||||||||||||||    
T  39779228 catctccttcccgtgtttgcacatgctcaaacatgtcaccaatctaatgtgctgc 39779282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 27442205 - 27442144
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatca 74  Q
    |||||||||| |||| |||||| |||||||||||||||||||||| |||||| |||||||||    
T  27442205 atatatatatgagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatca 27442144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 31642151 - 31642078
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||||| | |||||||| || |||| ||||    
T  31642151 atatatatatgagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctcaaccgtcgatt 31642078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 9197883 - 9197824
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| ||||||||| ||||||||||||||||| | ||||||||    
T  9197883 atatatatagagtcaggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatc 9197824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 9197083 - 9197152
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    |||||||||| |||| | |||| ||||||||||||||||||||||||||| | ||||||||  |||||||    
T  9197083 atatatatatgagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcctatccgtt 9197152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 41974628 - 41974688
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  41974628 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 41974688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 17725717 - 17725658
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| || | |||||| |||||| |||||||||||||||||||| | ||||||||    
T  17725717 atatatatagagacaggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatc 17725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 31602027 - 31602090
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaa 99  Q
    ||||||||||||||||||||||||||| | |||||||| || ||||  | || |||||||||||    
T  31602027 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtctaatttatttaatccaa 31602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 31641510 - 31641572
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    |||| |||||||||||||||||||||||| | ||||||| | ||||||||  | |||||||||    
T  31641510 agtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgttgatt 31641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 27441470 - 27441503
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    |||||| |||||||||||||||||||||||||||    
T  27441470 ggatccgttgacaccaggtgtcaacgaattcgtt 27441503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 3165186 - 3165126
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| |||||| |||||| |||||||||||| ||||||| | ||||||||    
T  3165186 atatatatatgagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatc 3165126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 11686230 - 11686274
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| ||||||||||||||| ||||||| | ||||||||    
T  11686230 ggatccattggcaccaggtgtcaacggattcgttgacaccaaatc 11686274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 38576350 - 38576306
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  38576350 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 38576306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 33277568 - 33277420
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaat 113  Q
    ||||||||| |||| | |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||   |||||||||||    
T  33277568 atatatatagagtcagaatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacatctgttgatttaatttaatccaatggctcttgttaat 33277469  T
Q  114 tcacttaacaatgtatgtaaaccatcgcctacttgatcttttattccat 162  Q
    ||||||||||||| |||| ||||||| || || |||| |||||||||||    
T  33277468 tcacttaacaatgcatgtgaaccatcacccacatgatattttattccat 33277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 10847290 - 10847428
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaaca 123  Q
    |||| |||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| ||   |||||||||||||||||||||    
T  10847290 agtcaggatccgttgacacctggtgtcaacgaattcgttaacactaaatcacatccgttgatttaatttaatcaaatggctcttgttaattcacttaaca 10847389  T
Q  124 atgtatgtaaaccatcgcctacttgatcttttattccat 162  Q
    ||| |||| ||||||| ||||| ||||||||||||||||    
T  10847390 atgcatgtgaaccatcacctacatgatcttttattccat 10847428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 44029823 - 44029664
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaaca 123  Q
    |||| |||||| |||||| | ||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |  | ||||||||| ||||||||    
T  44029823 agtcaggatccgttgacatctggtgtcaacgaattcgttaatactaaatcacatatgttgatttaatttaatccaatagtttttgttaatttacttaaca 44029724  T
Q  124 atgtatgtaaaccatcgcctacttgatcttttattccat-ggcttccatctccttcccgtg 183  Q
    ||| |||| |||||||  |||| |||||||||||||||| |  ||||||||||||| ||||    
T  44029723 atgcatgtgaaccatc-actacatgatcttttattccatagttttccatctccttcacgtg 44029664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 53629318 - 53629400
Alignment:
Q  81 ttgatttaatttaatccaaaaactcttgttaattcacttaacaatgtatgtaaaccatcgcctacttgatcttttattccatgg 164  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||||| | |||  |||||||||||||||||    
T  53629318 ttgatttaatttaattcaaaagctcttattaattcacttaacaatgcatgtgaaccatc-cttacacgatcttttattccatgg 53629400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 37988283 - 37988223
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||    
T  37988283 atatatatatgagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatc 37988223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 48765134 - 48765062
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||| | ||||||||  | |||||||||    
T  48765134 atatatatatagtcaggatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgttgatt 48765062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 48764465 - 48764538
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatt 86  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||||||| | |||||||| || |||| ||||    
T  48764465 atatatatatgagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtcgatt 48764538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 14871152 - 14871224
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||| |||||| ||||||||||||||||||||||||||| | |||||||| ||||  |||| ||| |||||||    
T  14871152 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcatctattgaattagtttaatc 14871224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 27082764 - 27082824
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||||| | ||||||||    
T  27082764 atatatatatgagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatc 27082824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 20213595 - 20213536
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| ||||||||||||||| ||||||||||| | ||||||||    
T  20213595 atatatatagagtcaggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatc 20213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 48649222 - 48649151
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||||||||||||||||||||||||  ||||||| | ||||||||  | |||||||||| |||| |||||||    
T  48649222 ggatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgttgatttcatttgatccaaa 48649151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 41458022 - 41458107
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    ||||||||| |||| |||| | |||| |||||||||||||| ||||||| | |||||||| || |||||| ||| ||||||||||||    
T  41458022 atatatatagagtcaggattcgttgataccaggtgtcaacggattcgttgacaccaaatctcaaccgttggttt-atttaatccaaa 41458107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 48648191 - 48648265
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgattt 87  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | ||||||||  | ||||||||||    
T  48648191 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgttgattt 48648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 981673 - 981738
Alignment:
Q  31 atccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||| ||||||||||||||||||||||||||| | |||||||| || ||||  |||| ||||||||    
T  981673 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtacatttcatttaatc 981738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 20212968 - 20213037
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    |||||||||| |||| | |||| ||||||||||||||||||||||||||| | ||||||||  |||||||    
T  20212968 atatatatatgagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcctatccgtt 20213037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 13477045 - 13477105
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||| || | ||||||||    
T  13477045 atatatatatgagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatc 13477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 37987232 - 37987308
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    ||||| ||||| ||||||||||||||||| | ||||||| | |||||||   |||||||||||| |||| |||||||    
T  37987232 agtcgcgatccgttgacaccaggtgtcaatggattcgttgacaccaaattttatccgttgattttatttgatccaaa 37987308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 52605537 - 52605489
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||| |||||| ||||||||||||||||||||||||| | |||||||||    
T  52605537 agtcaggatccgttgacaccaggtgtcaacgaattcgatgataccaaat 52605489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 264455 - 264514
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||  |||||||||||||||||||||||| | ||| ||| | ||||||||    
T  264455 atatatatatagttaggatccattgacaccaggtgtcaatggatttgttgacaccaaatc 264514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 17604010 - 17603943
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||| |||||||||||||||||| ||||||| | ||||||||  |  |||| |||||||||||||    
T  17604010 ggatccaatgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatc 17603943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 13477820 - 13477774
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    ||||||||||||||||||||||||||| | |||||||| || |||||    
T  13477820 ttgacaccaggtgtcaacgaattcgttgacaccaaatctcaaccgtt 13477774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 44701431 - 44701377
Alignment:
Q  66 accaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcactta 120  Q
    ||||||||| |||| ||||||| ||||||||| | ||||||| ||||||||||||    
T  44701431 accaaatcatatcccttgatttcatttaatccgacaactcttattaattcactta 44701377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 55373770 - 55373712
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    ||||||||| |||| |||| | ||||||||||||||||||| ||||||| | |||||||    
T  55373770 atatatatagagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaat 55373712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 11203248 - 11203203
Alignment:
Q  31 atccattgacaccaggtgtcaacgaattcgttaataccaaatcaca 76  Q
    |||| |||||||||||||||||| |||||||| | |||||||||||    
T  11203248 atccgttgacaccaggtgtcaacaaattcgttgaaaccaaatcaca 11203203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 46149632 - 46149677
Alignment:
Q  28 gggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||||||||||||||| | ||||||| | ||||||||    
T  46149632 gggatccattgacaccaggtgtcaatggattcgttgacaccaaatc 46149677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 48413330 - 48413375
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatcacatccgt 81  Q
    ||||||||||||||||||| ||||||| | ||||||||||| ||||    
T  48413330 ttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccgt 48413375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 51827558 - 51827485
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgattt 87  Q
    ||||||||||||||  ||||| |||||||| |||||||||| |||||||   ||||||||  | ||||||||||    
T  51827558 atatatatatagtcaagatccgttgacacctggtgtcaacggattcgttgtcaccaaatcttaaccgttgattt 51827485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 265159 - 265103
Alignment:
Q  17 tatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||| |||||  ||||| ||||||||||||||||||| ||||||| | ||||||||    
T  265159 tatatgtagtcatgatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 265103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 17603172 - 17603216
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  17603172 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 17603216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 21727578 - 21727534
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  21727578 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 21727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 31115664 - 31115604
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| ||||||||||| ||||||| ||||||||||  ||||||| | ||||||||    
T  31115664 atatatatatgagtcgggatccgttgacactaggtgtcaacagattcgttgacaccaaatc 31115604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 37520610 - 37520566
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| |||| |||||||||||||||||||||| | ||||||||    
T  37520610 ggatccgttgataccaggtgtcaacgaattcgttgacaccaaatc 37520566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 37682096 - 37682124
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaa 52  Q
    |||||||||||||||||||||||||||||    
T  37682096 agtcgggatccattgacaccaggtgtcaa 37682124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 48507081 - 48507037
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||| ||||||||| | ||||||||    
T  48507081 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatc 48507037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 8489333 - 8489257
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  8489333 agtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaa 8489257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 33436337 - 33436251
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||||||||||||| |||||| |||||||||| |||||||| ||||||| | ||||||||  |  ||||||||| |||| |||||||    
T  33436337 atatatatatagtcaggatccgttgacaccagatgtcaacggattcgttgacaccaaatcttaatcgttgatttcatttgatccaaa 33436251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 26529576 - 26529491
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaa 99  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||| || ||||  |||| | |||||||||    
T  26529576 atatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcaattaatccaa 26529491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 10171263 - 10171349
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaa 99  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||| || ||||  |||| | |||||||||    
T  10171263 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcaattaatccaa 10171349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 20834030 - 20833972
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||||||||||| |||||| |||||||||||||| ||||||| |||| | |||||||    
T  20834030 atatatatatagtcaggatccgttgacaccaggtgttaacgaatccgttgacaccaaat 20833972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 3623178 - 3623247
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatcca 98  Q
    |||||| |||||| ||||||||||||||||| || | |||||||| || ||||| |||| ||||||||||    
T  3623178 ggatccgttgacatcaggtgtcaacgaattctttgacaccaaatctcaaccgtttattttatttaatcca 3623247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 8488472 - 8488525
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    |||||||||||||||||||||||||| ||||||| | |||||||| || |||||    
T  8488472 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtt 8488525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 12344897 - 12344941
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||    
T  12344897 ggatccattgacaccaggtgtcaacagattcgttgataccaaatc 12344941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19311887 - 19311831
Alignment:
Q  17 tatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||| |||| | ||||||||||||||||||| ||||||| | ||||||||    
T  19311887 tatatatagtcaggattcgttgacaccaggtgtcaacggattcgttgacaccaaatc 19311831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 19323815 - 19323771
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  19323815 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 19323771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 3623795 - 3623728
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||| |||||||||| ||| |||||||||||| | |||||||| || ||||| |||| ||||||||    
T  3623795 ggatccgttgacaccagatgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 3623728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 10172029 - 10171970
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||  |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  10172029 atatatatagagttaggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatc 10171970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 26528826 - 26528870
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  26528826 ggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatc 26528870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 11751117 - 11751046
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  11751117 ggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatcacatccgttgattttatttgatccaaa 11751046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 1296368 - 1296427
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||||| | ||||||||    
T  1296368 atatatatagagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 1296427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 18174718 - 18174649
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatcca 98  Q
    |||||| |||||| |||||||||||||||||||| | |||||||| || ||||| |||| ||||||||||    
T  18174718 ggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatcca 18174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 22301182 - 22301243
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatca 74  Q
    |||||||||| |||| |||||| |||||||||||||||||||||| |||||| |||||||||    
T  22301182 atatatatatgagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatca 22301243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 27178693 - 27178600
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaactcttgttaattcacttaac 122  Q
    |||||| ||||||||||||||||||| |||  || | |||||||||  ||| ||||||| |||| ||||||   ||||||||||||||||||||    
T  27178693 ggatccgttgacaccaggtgtcaacggattgtttgacaccaaatcatgtcccttgatttcatttgatccaatggctcttgttaattcacttaac 27178600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 11750246 - 11750314
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    ||||||||| |||  |||||||||||||||||||||||||| ||||||| | |||||||| || |||||    
T  11750246 atatatatagagttaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtt 11750314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 8542612 - 8542537
Alignment:
Q  14 atatatatata-gtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgattta 88  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||| ||||||| | |||||||| || |||||||||||    
T  8542612 atatatatataagtcaggatccatggacactaggtgtcaacggattcgttgacaccaaatctcaaccgttgattta 8542537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 18174103 - 18174170
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||| |||||||||||||| |||||||||||| | |||||||| || ||||| |||| ||||||||    
T  18174103 ggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 18174170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 22301933 - 22301874
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||   |||||| ||||||||||||||||||||||||||| | ||||||||    
T  22301933 atatatatatagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 22301874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 9276392 - 9276334
Alignment:
Q  16 atatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||| | ||||||||    
T  9276392 atatatatgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9276334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 27177916 - 27177986
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaa 99  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| |  ||| ||||||| |||| ||||||    
T  27177916 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaattatgtcccttgatttgatttgatccaa 27177986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 18820431 - 18820480
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||| |||||||||||| ||||||| | ||||||||    
T  18820431 agtcgggatccattgacatcaggtgtcaacggattcgttgacaccaaatc 18820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 24755057 - 24754976
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaat 95  Q
    |||||||||||||| |||||| |||||||||||||||||   ||||||| | |||||||| ||| | || ||||| ||||||    
T  24755057 atatatatatagtcaggatccgttgacaccaggtgtcaattgattcgttgaaaccaaatctcatgcattaatttagtttaat 24754976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 9540335 - 9540379
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  9540335 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9540379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 18821294 - 18821254
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacg 54  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  18821294 atatatatagagtcaggatccattgacaccaggtgtcaacg 18821254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 29513195 - 29513151
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||    
T  29513195 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 29513151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 6584291 - 6584228
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcaca 76  Q
    |||||||||| |||| | |||||||||||||| ||||||||| ||||||| | |||||||||||    
T  6584291 atatatatatgagtcagaatccattgacaccaagtgtcaacggattcgttgacaccaaatcaca 6584228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 20632973 - 20632930
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaat 57  Q
    |||||||||||||| |||||| |||||||||||||| |||||||    
T  20632973 atatatatatagtcaggatccgttgacaccaggtgttaacgaat 20632930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 24121354 - 24121271
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||| |||| |||||||||||||||||||||||||  |||| || | |||||||| ||||| || ||||  |||||||    
T  24121354 atatatatatgagtcaggatccattgacaccaggtgtcaacagattcattgagaccaaatctcatccattaatttggtttaatc 24121271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 8541740 - 8541830
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatccaaaaact 104  Q
    ||||||||| |||| |||||| |||||| ||||| |||||||||||||| | || |||||  |  |||||||||  ||| |||||||||||    
T  8541740 atatatatagagtcaggatccgttgacatcaggtctcaacgaattcgttgacacaaaatcttaatcgttgatttcttttgatccaaaaact 8541830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 23343768 - 23343850
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||| |||||  |||||||||| |||||||| ||||||| | | |||||| || | |||||| | ||||||||    
T  23343768 atatatatatagtcaggatctgttgacaccagatgtcaacggattcgttgacatcaaatctcaactgttgatcttatttaatc 23343850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 26752772 - 26752738
Alignment:
Q  28 gggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    ||||||| |||||||||||||||||||||||||||    
T  26752772 gggatccgttgacaccaggtgtcaacgaattcgtt 26752738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26752026 - 26752075
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||| |||||| |||||||||||||||||||||| |||||| || |||||    
T  26752026 agtcaggatccgttgacaccaggtgtcaacgaatccgttaacactaaatc 26752075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 29559461 - 29559424
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  29559461 ttgacaccaggtgtcaacgaattcgttgacaccaaatc 29559424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 1297171 - 1297127
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  1297171 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 1297127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 9275590 - 9275634
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  9275590 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 9275634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 29719450 - 29719494
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  29719450 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 29719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 17071857 - 17071775
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||||| |||  |||||| |||||||||||||| |||||||||||| | |||||||| || ||||| |||| ||||||||    
T  17071857 atatatatagagttaggatccgttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 17071775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 17071227 - 17071296
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatcca 98  Q
    |||||| |||||| |||||||||||||||||||| | |||||||| || ||||| |||| ||||||||||    
T  17071227 ggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatcca 17071296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 34600264 - 34600333
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatcca 98  Q
    |||||| |||||| |||||||||||||||||||| | |||||||| || ||||| |||| ||||||||||    
T  34600264 ggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctcaaccgtttattttatttaatcca 34600333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 235595 - 235662
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||||||||||||||| ||||||| | |||||||| || ||||  |||| ||||||||    
T  235595 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgtctatttcatttaatc 235662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 1281839 - 1281906
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||  |  |||| |||||||||||||    
T  1281839 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcatttaatttaatc 1281906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 4084868 - 4084927
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| |||||||| |||||||||||||||||| | ||||||||    
T  4084868 atatatatagagtcaggatccgttgacacctggtgtcaacgaattcgttgacaccaaatc 4084927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 29046017 - 29046076
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  29046017 atatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 29046076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 34600879 - 34600812
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||| |||||||||||||| |||||||||||| | |||||||| || ||||| |||| ||||||||    
T  34600879 ggatcccttgacaccaggtgttaacgaattcgttgacaccaaatcgcaaccgtttattttatttaatc 34600812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 234689 - 234747
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||    
T  234689 atatatatagagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 14478909 - 14478967
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||||||||||| |||||| |||||| |||||||||||| ||||||| | |||||||    
T  14478909 atatatatatagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaat 14478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 19128757 - 19128839
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaat 95  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | ||||||||  | ||||| |||| |||||||    
T  19128757 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtttattttatttaat 19128839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 29087913 - 29087995
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||||| |||| |||||| ||||||||||||||||||| |||| || | |||||||| ||||| || ||||  |||||||    
T  29087913 atatatatagagtcaggatccgttgacaccaggtgtcaacggattcattgacaccaaatctcatccattaatttggtttaatc 29087995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 25858197 - 25858258
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatca 74  Q
    |||||||||| ||||||||||| ||||||| ||||||||||| ||||||| | |||||||||    
T  25858197 atatatatatgagtcgggatccgttgacactaggtgtcaacggattcgttgacaccaaatca 25858258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 1554131 - 1554087
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  1554131 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 1554087  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 19360529 - 19360481
Alignment:
Q  24 agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||| |||||| ||||||||||||||||||||||||||| | |||||||    
T  19360529 agtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 19360481  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 236977 - 236910
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    |||||||||||||||||||||||||| ||||||  | |||||||| || ||||  |||| ||||||||    
T  236977 ggatccattgacaccaggtgtcaacggattcgtagacaccaaatctcaaccgtctatttcatttaatc 236910  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 237885 - 237826
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||    
T  237885 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 237826  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 19359691 - 19359750
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||    
T  19359691 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 19359750  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 36038697 - 36038748
Alignment:
Q  28 gggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatcc 79  Q
    ||||||| |||||||||||| |||||| ||||||||| |||||||| |||||    
T  36038697 gggatccgttgacaccaggtatcaacggattcgttaacaccaaatctcatcc 36038748  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 1553419 - 1553456
Alignment:
Q  37 tgacaccaggtgtcaacgaattcgttaataccaaatca 74  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  1553419 tgacaccaggtgtcaacgaatccgttaacaccaaatca 1553456  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 28705943 - 28705894
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    |||||||||| |||| |||||| ||||||||||||||||||| |||||||    
T  28705943 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgtt 28705894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 6476839 - 6476795
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  6476839 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 6476795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 7632098 - 7632142
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||    
T  7632098 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 7632142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 22799824 - 22799764
Alignment:
Q  14 atatatatata-gtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||| ||| | |||| ||||||||||||||||| ||||||||| | ||||||||    
T  22799824 atatatatataagtcagaatccgttgacaccaggtgtcaatgaattcgttgacaccaaatc 22799764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 33471152 - 33471104
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgtt 62  Q
    |||||||||||||  |||||  ||||||||| |||||||||||||||||    
T  33471152 atatatatatagttaggatctgttgacaccacgtgtcaacgaattcgtt 33471104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 34709078 - 34709018
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatcacatccgttgatttaatttaatc 96  Q
    ||||||||||||||||||| |||||||   |||||||| ||||| |||||||  |||||||    
T  34709078 ttgacaccaggtgtcaacggattcgttggcaccaaatctcatccattgatttggtttaatc 34709018  T

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Target: scaffold0086 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 8340 - 8296
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  8340 ggatccattgacaccaggtgtcaacgtattcgttaacaccaaatc 8296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 26579 - 26642
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatcaca 76  Q
    |||||||||| |||| |||||| ||||||||||||||||||| ||||||| | |||||||||||    
T  26579 atatatatatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatcaca 26642  T

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Target: scaffold2007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 738 - 798
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||| |||| ||||||||||||||||||| |||||| ||||||| | ||||||||    
T  738 atatatatatgagtcaggatccattgacaccaggtttcaacggattcgttgacaccaaatc 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 1575 - 1634
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    |||||||||||  | |||||  ||||||||||||||||||||||||||| | ||||||||    
T  1575 atatatatatatacaggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 428965 - 428906
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||| |||| |||||| |||||||| ||| |||||||||||||| | ||||||||    
T  428965 atatatatagagtcaggatccgttgacacccggtatcaacgaattcgttgacaccaaatc 428906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 6949 - 6891
Alignment:
Q  14 atatatatat-agtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaa 71  Q
    |||||||||| |||| |||||| |||||||||||||||||| |||||||| | ||||||    
T  6949 atatatatatgagtcaggatccgttgacaccaggtgtcaacaaattcgttgacaccaaa 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 22134 - 22076
Alignment:
Q  14 atatatatatagtcgggatccattgacaccaggtgtcaacgaattcgttaataccaaat 72  Q
    ||||||||| || | |||||| ||||||||||||||||||| ||||||| | |||||||    
T  22134 atatatatagagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 22076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 15900 - 15863
Alignment:
Q  36 ttgacaccaggtgtcaacgaattcgttaataccaaatc 73  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  15900 ttgacaccaggtgtcaacgaattcgttgacaccaaatc 15863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 23777 - 23724
Alignment:
Q  29 ggatccattgacaccaggtgtcaacgaattcgttaataccaaatcacatccgtt 82  Q
    ||||||||||||||||| |||||||| ||||||| | |||||||| || |||||    
T  23777 ggatccattgacaccagttgtcaacggattcgttgacaccaaatctcaaccgtt 23724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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