View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_low_21 (Length: 224)
Name: NF2323_low_21
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 50967934 - 50967743
Alignment:
| Q |
17 |
aaaataattaatgaaattaccatacaactaaatggacttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatcca |
116 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50967934 |
aaaataattaatgaaattaccctacaactaa-tggatttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatcca |
50967836 |
T |
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| Q |
117 |
aattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatctgagctggatataact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50967835 |
aattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatccgagctggatataact |
50967743 |
T |
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Target: chr3; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 51071069 - 51070878
Alignment:
| Q |
17 |
aaaataattaatgaaattaccatacaactaaatggacttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatcca |
116 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071069 |
aaaataattaatgaaattaccctacaactaa-tggatttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatcca |
51070971 |
T |
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| Q |
117 |
aattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatctgagctggatataact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51070970 |
aattaaaataacatttttccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatccgagctggatataact |
51070878 |
T |
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