View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2323_low_6 (Length: 393)
Name: NF2323_low_6
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 39471369 - 39470992
Alignment:
| Q |
1 |
tattgaataataaataattccaacaagataataacaacaatctagttttacannnnnnnnnnnnnnnnnncagatagtttttacatattcttgtacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39471369 |
tattgaataataaataattccaacaagataataacaacaatccagttttacatttttttttcctttttt-cagatagtttttacatattcttgtacacca |
39471271 |
T |
|
| Q |
101 |
caaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatccatcaattctcccataaataatataaagacaaacatttcaatctcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471270 |
caaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatccatcaattctcccataaataatataaagacaaacatttcaatctcatg |
39471171 |
T |
|
| Q |
201 |
ccataaagttctcatatcatgccatcccgcaaagccatgacatcactcacaaagatttcttttattatgatactaaatctctacacgaattcatctattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471170 |
ccataaagttctcatatcatgccatcccgcaaagccatgacatcactcacaaaggtttcttttattatgatactaaatctctacacgaattcatctattc |
39471071 |
T |
|
| Q |
301 |
ctgttcctaaagaaaggnnnnnnnnnncaggtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtg |
379 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39471070 |
ctgttcctaaagaaaggaaaaaaaaaacaggtatatcaaagaacaattcagagaaacagtaactcacactgagtaagtg |
39470992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 39464898 - 39464853
Alignment:
| Q |
229 |
gcaaagccatgacatcactcacaaagatttcttttattatgatact |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
39464898 |
gcaaagccatgacatcactcacaaagattcctcttattatgatact |
39464853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University