View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2323_low_7 (Length: 376)
Name: NF2323_low_7
Description: NF2323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2323_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 32425929 - 32426274
Alignment:
| Q |
14 |
agagataaagtaaccagaaataagtaactaaatacaatatataccaaagataacaaatatcagcaggaactcaaaagaaagtttgtttaaagaacatcct |
113 |
Q |
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| T |
32425929 |
agagataaagtaaccagaaataagtaactaaatacaatatacaccaaagataacaaatatcagcaggaactcaaaagaaagtttgtttaaagaacatcct |
32426028 |
T |
|
| Q |
114 |
aaattttgttagatgatacctaatagcgcacataaacgtagatgcaacaagcatctctatggtatcatgactgattcacagtttcaatatatttttaaac |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32426029 |
aaattttgttagatgatacccaatagcgcacataaatgtagatgcaacaagcatctctatggtgtcatgactgattcacagtttcaatatatttttaaac |
32426128 |
T |
|
| Q |
214 |
cagaagttttcattttcatgaaataaaaccagaaattcagaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcg |
313 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426129 |
cagaacttttcattttcatgaaataaaaccagaaattcacaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcg |
32426228 |
T |
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| Q |
314 |
aacttccaccagatcagaaccttttcgaacaaaagaaagtgcaatc |
359 |
Q |
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| T |
32426229 |
aacttccaccagatcagaaccttttcgaacaaaagaaagtgcaatc |
32426274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 32419887 - 32420008
Alignment:
| Q |
238 |
aaaaccagaaattcagaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcgaacttccaccagatcagaaccttt |
337 |
Q |
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| T |
32419887 |
aaaatcagaaattcataacatagcatacctttgacatgagaagaatgttcttagcatggtgtcctagcagtttccgaacttgcaccagatcagaaccttt |
32419986 |
T |
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| Q |
338 |
tcgaacaaaagaaagtgcaatc |
359 |
Q |
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| T |
32419987 |
tcgaacaaatgaaagcgcaatc |
32420008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 40597039 - 40597160
Alignment:
| Q |
238 |
aaaaccagaaattcagaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcgaacttccaccagatcagaaccttt |
337 |
Q |
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|||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| | ||| | || || ||||||| |||||||||||||||||| |
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| T |
40597039 |
aaaatcagaaattcataatatagcatacctttgacatgagaagaatgttcttagcatggtgtcctagcagtttccgaacttgcaccagatcagaaccttt |
40597138 |
T |
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| Q |
338 |
tcgaacaaaagaaagtgcaatc |
359 |
Q |
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| T |
40597139 |
tcgaacaaaagatagtgcaatc |
40597160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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